G156009


Basic Information

Item Value
gene id G156009
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 3960894 ~ 4005992 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU211548
tgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgaggtagTGAGGTTGTATTTGGATCCCTGTAAAATGGCATTCACCAGCAGATATGCCTACATGTGTCCAGTGTTCTTCACTGCACTCGTGTTCCGGTTCTTCTGATCCACACTTACTAATGCGTTCATCTCCACCCAGTTCTGCAGTcttttataaatacatacatacaataacTATAAACACTGCAGGTTTTAtccattatatacatatatattatataagatatataaatcaatacttattttcattgttttatatgggttttttggaaataaatgtattctCTCTAGCTAAAGTTAATTCAGGGTCTTTGTACTAATCTGACGTTGCTACTGTTCACCTGAAATATCGtaactttcacaaaaaaaataaataaataaacaaagcttTACAGTTCCAATTTtgtagcatttctattggtccgtttatcatgacattttgaGACAATGTAAAGATAAACTGCcaaatttgctttaaaatggcaaaaagaaaacaacataaaatacaaggtttttcATGATGGTTAcgacatattttaaaatatatatcactaTTTTTCACATCTCACCGTCATCTGTGAAAGTTAATTGATACTGCAAGTTGTTGTGGTCTCCTGGTTTCAGACTCTCAGTTCCTcagctgttcctcactgttttAATCACGAGTGTAGATTGTTGTGGCTTTCATTTGGTTTGAtttcatttgctttttttggtTTTGATGCTACACTAGTTTGCCATGTAGCAGTTGCACTGTGCAATATTGGACAGTATGAGGAGTGGGGAAGTGTAACCCTCTGATGTAATGTCTCTACAGTTTGCGATAGTGTATCCTCTCTAGTTCTCAGTGATTTAGATGTGACCAAGCCTTCTCAACTTTGTCACATTAAGCGGGTTTTCCAGGTGACTATTTTGGTGAGTGTCAAAATAAGAGTTTATGGTGTATTGTCAAGATTcactttgaattaaaaaaaatctattgctGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211548 True 1041 lncRNA 0.35 2 3960894 4005992

Neighbor

gene id symbol gene type direction distance location
LOC103025504 LOC108425960,LOC108266765 coding upstream 61679 3858506 ~ 3899215 (+)
ndufa10 NA coding upstream 997343 2942774 ~ 2963551 (+)
LOC103044837 NA coding upstream 1022824 2882827 ~ 2938070 (+)
parp9 NA coding upstream 1154140 2792039 ~ 2806754 (+)
lrch3 lrch3,LOC103027580 coding upstream 1239935 2671503 ~ 2720959 (+)
LOC103036857 LOC108433503,LOC108264854 coding downstream 2334 4008326 ~ 4123480 (+)
LOC103029469 spon1,spon1a,LOC107741890 coding downstream 290327 4296319 ~ 4510540 (+)
LOC103037478 LOC108434021 coding downstream 672211 4678203 ~ 4738405 (+)
LOC103030327 maf,LOC108428434,LOC107728098,LOC107381304,LOC108274756 coding downstream 910236 4916228 ~ 4920871 (+)
LOC103036856 LOC103036856 coding downstream 1515694 5521686 ~ 5524043 (+)
G155985 NA non-coding upstream 53699 3906994 ~ 3907195 (+)
G155978 NA non-coding upstream 112022 3848455 ~ 3848872 (+)
G155976 NA non-coding upstream 113277 3846849 ~ 3847617 (+)
G155967 NA non-coding upstream 191567 3768573 ~ 3769327 (+)
G155956 NA non-coding upstream 284037 3676632 ~ 3676857 (+)
G156050 NA non-coding downstream 182514 4188506 ~ 4188789 (+)
G156060 NA non-coding downstream 239259 4245251 ~ 4245521 (+)
G156062 NA non-coding downstream 241830 4247822 ~ 4248039 (+)
G156066 NA non-coding downstream 263513 4269505 ~ 4269708 (+)
G156080 NA non-coding downstream 363738 4369730 ~ 4370105 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other upstream 28731 3929331 ~ 3932163 (+)
LOC111194753 NA other upstream 346403 3611018 ~ 3614491 (+)
G155776 NA other upstream 1205782 2738361 ~ 2755112 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other upstream 2682632 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other upstream 2737544 1203741 ~ 1223350 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other downstream 569676 4575668 ~ 4637290 (+)
G156188 NA other downstream 1151162 5157154 ~ 5157400 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 3087515 7093507 ~ 7171625 (+)
LOC111194759 NA other downstream 3366384 7372376 ~ 7431568 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other downstream 3594575 7600567 ~ 7606668 (+)

Expression


Co-expression Network