G156225


Basic Information

Item Value
gene id G156225
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 5602332 ~ 5611273 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU211802
CTGTTATCCATTTAATTAGTtgcaaaatgttttacatttaaatgtttaactataaCTTTAAACAGATAATCAATTTCTCCAGTGTTTAAACACACTGCACTTAACGCTCTCATCCTCAATCCAAAGATCATGGTGATCAGAATCCTGTGCTGTGGATCCCTCTGAAGAGTAAAGTCTATGAGACCGTGTTGATACTGTAGCCTGGTCCGCAATGCTGGGAAGCATCTTTCTTGGCTCAGGGTTCAGCTTTAGTTCCGTCCTTCAGACGCCGTCTCATCTCTGCTGCATGAGCCTGACTCTGCGTCCGCTTTGCCTGATACTTTTCTTCAGACACGCTCTCATCACACGATCCAAATCATTACACGATCCAAAGAACCTGAGGACATTGTGCTCCTTATGGCACTGTTTGAGATGTGCTATCAGTTCGTTGCATTCATCTGTGTGTAAATGGGGTGACAGATCTGAGTGCATCCTGAGTTAAGGCTTCTTTAaCTGATGTTCTCCAGCAGATATACTTTATCAGGCCGCGCTGATCAAATACATTAACCTGGATACAATGTAGCCACGCTGTTTTCACACTAAACCACAGCAGAGGTGAGTCCGCTGATATCTCGGCCAGCAGATGGCAGCACCACCACTcagttaaaataatagtaaaattaataaattaatgaataaagaataataCAGCTTTACATATCCACAAATAGAtttcaattattaataataataatttatttatctacAAGGGTGGTTCTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211802 True 760 lncRNA 0.40 4 5602332 5611273

Neighbor

gene id symbol gene type direction distance location
cdyl2 cdyl2 coding upstream 4544 5536734 ~ 5597788 (+)
LOC103036856 LOC103036856 coding upstream 78289 5521686 ~ 5524043 (+)
LOC103030327 maf,LOC108428434,LOC107728098,LOC107381304,LOC108274756 coding upstream 681461 4916228 ~ 4920871 (+)
LOC103037478 LOC108434021 coding upstream 863927 4678203 ~ 4738405 (+)
LOC103029469 spon1,spon1a,LOC107741890 coding upstream 1091792 4296319 ~ 4510540 (+)
cenpn cenpn coding downstream 1688 5612961 ~ 5619291 (+)
atmin atmin coding downstream 9947 5621220 ~ 5630190 (+)
LOC103034771 LOC108442590 coding downstream 27975 5639248 ~ 5641113 (+)
gse1 gse1,LOC107565336,LOC107719882,LOC107661366 coding downstream 91823 5703096 ~ 6042503 (+)
LOC103031281 cox4i1,LOC103031281,LOC108412231,LOC107663352,LOC107731261,LOC107565335,LOC107572641 coding downstream 451979 6063252 ~ 6065533 (+)
G156215 NA non-coding upstream 673 5601105 ~ 5601659 (+)
G156209 NA non-coding upstream 117287 5484764 ~ 5485045 (+)
G156204 NA non-coding upstream 160333 5441738 ~ 5441999 (+)
G156202 NA non-coding upstream 275361 5326762 ~ 5326971 (+)
G156190 NA non-coding upstream 390898 5210955 ~ 5211434 (+)
G156233 NA non-coding downstream 34608 5645881 ~ 5648574 (+)
G156331 NA non-coding downstream 439207 6050480 ~ 6052382 (+)
G156326 emc8,LOC106587369 non-coding downstream 445396 6056669 ~ 6061997 (+)
G156340 NA non-coding downstream 505872 6117145 ~ 6117589 (+)
G156395 NA non-coding downstream 695452 6306725 ~ 6307420 (+)
G156188 NA other upstream 444932 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 965042 4575668 ~ 4637290 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other upstream 1670169 3929331 ~ 3932163 (+)
LOC111194753 NA other upstream 1987841 3611018 ~ 3614491 (+)
G155776 NA other upstream 2847220 2738361 ~ 2755112 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 1482234 7093507 ~ 7171625 (+)
LOC111194759 NA other downstream 1761103 7372376 ~ 7431568 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other downstream 1989294 7600567 ~ 7606668 (+)
G157055 NA other downstream 2958657 8569930 ~ 8570877 (+)
G157383 NA other downstream 4329556 9940829 ~ 9941805 (+)

Expression


Co-expression Network