G156340


Basic Information

Item Value
gene id G156340
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 6117145 ~ 6117589 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU211931
acccaggcagggagacgaggaaagcggacacaagtgcaggtaagaacaaaaggaaatatttaataaataaataacaaagataaacaaagaaacaagtaaacacgtaacaaagataataaaccaaaataaacgagggagactagagaacataaacaaactagagataataataatgataaacaaacagggaatatatataaggagcaaaactagaaaataaacacaaagcagggtatatacaagagaataacaagggaaactagaaataaacaggactaggaagactaaactgagcagggcaataaacagggaaaataacaaggaacagaggctatgaaaaaCGGAGAAACTAcgaaacacggagagacaaaacaacaggggttagtgcaaagaccgacggagacaaagtggtagacgagggctatttaaagaaacaggaaacact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211931 True 445 lncRNA 0.36 1 6117145 6117589

Neighbor

gene id symbol gene type direction distance location
irf8 irf8 coding upstream 6139 6100753 ~ 6111006 (+)
LOC103030962 ds22a,LOC108434600,LOC105892932,LOC106562285 coding upstream 21477 6067215 ~ 6095668 (+)
LOC103031281 cox4i1,LOC103031281,LOC108412231,LOC107663352,LOC107731261,LOC107565335,LOC107572641 coding upstream 51612 6063252 ~ 6065533 (+)
gse1 gse1,LOC107565336,LOC107719882,LOC107661366 coding upstream 74642 5703096 ~ 6042503 (+)
LOC103034771 LOC108442590 coding upstream 476032 5639248 ~ 5641113 (+)
foxf1 foxf1 coding downstream 184259 6301848 ~ 6305572 (+)
dbndd1 dbndd1,dbnd1,LOC106562278 coding downstream 207232 6324821 ~ 6363149 (+)
gas8 gas8,LOC108276428 coding downstream 365230 6482819 ~ 6488287 (+)
LOC103042367 LOC108435537,LOC105906449,LOC101169526 coding downstream 613581 6731170 ~ 6759468 (+)
zdhhc7 zdhhc7,LOC108435925,LOC107705792,LOC107573093,LOC107736389,LOC107686620,LOC107662857,LOC107601043 coding downstream 691346 6808935 ~ 6817496 (+)
G156326 emc8,LOC106587369 non-coding upstream 55148 6056669 ~ 6061997 (+)
G156331 NA non-coding upstream 64763 6050480 ~ 6052382 (+)
G156233 NA non-coding upstream 468571 5645881 ~ 5648574 (+)
G156225 NA non-coding upstream 505872 5602332 ~ 5611273 (+)
G156215 NA non-coding upstream 515486 5601105 ~ 5601659 (+)
G156395 NA non-coding downstream 189136 6306725 ~ 6307420 (+)
G156397 NA non-coding downstream 190644 6308233 ~ 6308561 (+)
G156399 NA non-coding downstream 191783 6309372 ~ 6309620 (+)
G156402 NA non-coding downstream 196363 6313952 ~ 6317024 (+)
G156419 LOC108434843,LOC108264624 non-coding downstream 265678 6383267 ~ 6384043 (+)
G156188 NA other upstream 959745 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 1479855 4575668 ~ 4637290 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other upstream 2184982 3929331 ~ 3932163 (+)
LOC111194753 NA other upstream 2502654 3611018 ~ 3614491 (+)
G155776 NA other upstream 3362033 2738361 ~ 2755112 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 975918 7093507 ~ 7171625 (+)
LOC111194759 NA other downstream 1254787 7372376 ~ 7431568 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other downstream 1482978 7600567 ~ 7606668 (+)
G157055 NA other downstream 2452341 8569930 ~ 8570877 (+)
G157383 NA other downstream 3823240 9940829 ~ 9941805 (+)

Expression


Co-expression Network