G156402


Basic Information

Item Value
gene id G156402
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 6313952 ~ 6317024 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU212022
caatgatTGATACAGTGTGCTGATTTTTTCATCTGTATTGTGTACCCTGTAAAAATTAGACTTAGAGATGACACAGTTGATCTTATTTctaaaggtttattttttttactctacagtaaaaatctgtaaaaatacaaacattcaCAAGATCCTCAAATCTCACTTTGATGATCTGATATTTTCTCAAGCACAAAAAAACTTATACCACCGCTTAGACCTATACCACCGTTTTTGACCTTTTCTTGACCTTGTATCTAAGTCCCCGGTTGGTCTGGGACAGTAGTGCTGACGGTGGTGGCTGTGGCCATTGGGGTGTGAGCTGTTCCTTTGGCTTCTTTCCTCCTGGGCCTCTGCTGTGTTTGGTTAGGCCTGCGGCCACCCCTCTGGCTCCTAGCTCGCTCTGCCTGGAGGGTGTGGCCGTTGATTGAGAGCTCCTGCAGGGCAGTTAGGGCCAGGTCAGCCGCCGGCTCATCGCTGTACTCGAGGAAAGCTCTGTGCTGCGCCCCTTGCCAGGTGAGCCTGAGAGGTACGGCATTGCGTTCCCTCAGGACGCTCTTCAGCTCACTCACCCGCAGTCCAGCAGGGATGCCTCCAAGGTAAAGCGTGCTGGAGGGACACTGAGGAGGCTCACGCCCCACAGCACCTCCTTCAGGCCTGTCAGATCCATCCCTCACTGGCCCAATGTGCTGAGGTTTGGGATCCTGTTTGGGTTCTCGCCTCGGTCTACGCTTTGGGTTGGGTTTAGCCTCCTCTTTTGGCTCCTCCTTAAGTTTCTCACATTCAGCAGGGGGCGCTCTTAGCGTGACATCTTTGCCAGCCTTCTGCTCCAAAGCTCTGAGTTTCTTCAGGATGGGAATTTTCTGCAGCATCTCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU212022 True 875 lncRNA 0.51 2 6313952 6317024

Neighbor

gene id symbol gene type direction distance location
foxf1 foxf1 coding upstream 8380 6301848 ~ 6305572 (+)
irf8 irf8 coding upstream 202946 6100753 ~ 6111006 (+)
LOC103030962 ds22a,LOC108434600,LOC105892932,LOC106562285 coding upstream 218284 6067215 ~ 6095668 (+)
LOC103031281 cox4i1,LOC103031281,LOC108412231,LOC107663352,LOC107731261,LOC107565335,LOC107572641 coding upstream 248419 6063252 ~ 6065533 (+)
gse1 gse1,LOC107565336,LOC107719882,LOC107661366 coding upstream 271449 5703096 ~ 6042503 (+)
dbndd1 dbndd1,dbnd1,LOC106562278 coding downstream 7797 6324821 ~ 6363149 (+)
gas8 gas8,LOC108276428 coding downstream 165795 6482819 ~ 6488287 (+)
LOC103042367 LOC108435537,LOC105906449,LOC101169526 coding downstream 414146 6731170 ~ 6759468 (+)
zdhhc7 zdhhc7,LOC108435925,LOC107705792,LOC107573093,LOC107736389,LOC107686620,LOC107662857,LOC107601043 coding downstream 491911 6808935 ~ 6817496 (+)
cog8 cog8,LOC107686577,LOC107573089 coding downstream 506605 6823629 ~ 6828644 (+)
G156399 NA non-coding upstream 4332 6309372 ~ 6309620 (+)
G156397 NA non-coding upstream 5391 6308233 ~ 6308561 (+)
G156395 NA non-coding upstream 6532 6306725 ~ 6307420 (+)
G156340 NA non-coding upstream 196363 6117145 ~ 6117589 (+)
G156326 emc8,LOC106587369 non-coding upstream 251955 6056669 ~ 6061997 (+)
G156419 LOC108434843,LOC108264624 non-coding downstream 66243 6383267 ~ 6384043 (+)
G156431 tubb3,LOC107552791,LOC108272015,LOC108431516 non-coding downstream 92597 6409621 ~ 6412224 (+)
G156434 NA non-coding downstream 111040 6428064 ~ 6428293 (+)
G156435 NA non-coding downstream 112999 6430023 ~ 6430626 (+)
G156436 NA non-coding downstream 115373 6432397 ~ 6432862 (+)
G156188 NA other upstream 1156552 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 1676662 4575668 ~ 4637290 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other upstream 2381789 3929331 ~ 3932163 (+)
LOC111194753 NA other upstream 2699461 3611018 ~ 3614491 (+)
G155776 NA other upstream 3558840 2738361 ~ 2755112 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 776483 7093507 ~ 7171625 (+)
LOC111194759 NA other downstream 1055352 7372376 ~ 7431568 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other downstream 1283543 7600567 ~ 7606668 (+)
G157055 NA other downstream 2252906 8569930 ~ 8570877 (+)
G157383 NA other downstream 3623805 9940829 ~ 9941805 (+)

Expression


Co-expression Network