G156419 (LOC108434843,LOC108264624)


Basic Information

Item Value
gene id G156419
gene name LOC108434843,LOC108264624
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 6383267 ~ 6384043 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU212040
CTCCAGACCAAGCTCTCGCTCCGCTTGCTCCAAGTTCCTTTCAAATGTGTCGACAGTACCAATGTTGAACCAAACataattCACTTCAGATGTGTTCACTCCTGGAGCAGGGAGCACTCTCACATACTGTTTATTAACCACTTCAAGGCGTTCAACCAGTCCTTTGGCGAGGTAGTAAGTAACAAAATCCCTCCATGATATCTCTTTTCCTGTGTCTCTGAAGTGCAAATACAGGAACGCT

Function

NR:

description
PREDICTED: AFG3-like protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU212040 True 241 lncRNA 0.45 3 6383267 6384043

Neighbor

gene id symbol gene type direction distance location
dbndd1 dbndd1,dbnd1,LOC106562278 coding upstream 20118 6324821 ~ 6363149 (+)
foxf1 foxf1 coding upstream 77695 6301848 ~ 6305572 (+)
irf8 irf8 coding upstream 272261 6100753 ~ 6111006 (+)
LOC103030962 ds22a,LOC108434600,LOC105892932,LOC106562285 coding upstream 287599 6067215 ~ 6095668 (+)
LOC103031281 cox4i1,LOC103031281,LOC108412231,LOC107663352,LOC107731261,LOC107565335,LOC107572641 coding upstream 317734 6063252 ~ 6065533 (+)
gas8 gas8,LOC108276428 coding downstream 98776 6482819 ~ 6488287 (+)
LOC103042367 LOC108435537,LOC105906449,LOC101169526 coding downstream 347127 6731170 ~ 6759468 (+)
zdhhc7 zdhhc7,LOC108435925,LOC107705792,LOC107573093,LOC107736389,LOC107686620,LOC107662857,LOC107601043 coding downstream 424892 6808935 ~ 6817496 (+)
cog8 cog8,LOC107686577,LOC107573089 coding downstream 439586 6823629 ~ 6828644 (+)
wdr59 wdr59,LOC107686576 coding downstream 454835 6838878 ~ 6858524 (+)
G156402 NA non-coding upstream 66243 6313952 ~ 6317024 (+)
G156399 NA non-coding upstream 73647 6309372 ~ 6309620 (+)
G156397 NA non-coding upstream 74706 6308233 ~ 6308561 (+)
G156395 NA non-coding upstream 75847 6306725 ~ 6307420 (+)
G156340 NA non-coding upstream 265678 6117145 ~ 6117589 (+)
G156431 tubb3,LOC107552791,LOC108272015,LOC108431516 non-coding downstream 25578 6409621 ~ 6412224 (+)
G156434 NA non-coding downstream 44021 6428064 ~ 6428293 (+)
G156435 NA non-coding downstream 45980 6430023 ~ 6430626 (+)
G156436 NA non-coding downstream 48354 6432397 ~ 6432862 (+)
G156438 NA non-coding downstream 57008 6441051 ~ 6441277 (+)
G156188 NA other upstream 1225867 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 1745977 4575668 ~ 4637290 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other upstream 2451104 3929331 ~ 3932163 (+)
LOC111194753 NA other upstream 2768776 3611018 ~ 3614491 (+)
G155776 NA other upstream 3628155 2738361 ~ 2755112 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 709464 7093507 ~ 7171625 (+)
LOC111194759 NA other downstream 988333 7372376 ~ 7431568 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other downstream 1216524 7600567 ~ 7606668 (+)
G157055 NA other downstream 2185887 8569930 ~ 8570877 (+)
G157383 NA other downstream 3556786 9940829 ~ 9941805 (+)

Expression


Co-expression Network