G156436


Basic Information

Item Value
gene id G156436
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 6432397 ~ 6432862 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU212066
GCAGGGCAGAGAGGGGGGCCGTGCGCAGGATCGgctggtgtgtgtgagatggcCAACATTCCGCCCATTCTTTCCTATGGGGAAAGTTCGTACGATAATTTTACGAAAACCGTAAATCGTATCGGTGAGATCAGCATATCGTCTGAAACGTCTCTGCAAGTTCTGTATGTCTTGTGAATTTCGTGGTTCTAGCTTGAAAATTGTGACTTTTAgagcagtttgaaaaaagtgTGAATGGAAGTCTATGGGAAAAAATCTGACTTTGGCGGACCACCGATCGGACCCTGGTGGTCCGATCACTTAGAAAAGCACAAGCACAAGCTCTTTTCCACACATCTTGTGAAGTTTGGTGGTTCTAGCTTGAAAACTGTAGGAGGAGAAACTGTTTATaaaaagtttatagaataataataataataataataataataataataagattacgaagaacaataagttggctttt
>TU212069
GCAGGGCAGAGAGGGGGGCCGTGCGCAGGATCGgctggtgtgtgtgagatggcCAACATTCCGCCCATTCTTTCCTATGGGGAAAGTTCGTACGATAATTTTACGAAAACCGTAAATCGTATCGGTGAGATCAGCATATCGTCTGAAACGTCTCTGCAAGTTCTGTATGTCTTGTGAATTTCGTGGTTCTAGCTTGAAAATTGTGACTTTTAgagcagtttgaaaaaagtgTGAATGGAAGTCTATGGGAAAAAATCTGACTTTGGCGGACCACCGATCGGACCCTGGTGGTCCGATCACTTAGAAAAGCACAAGCACAAGCTCTTTTCCACACATCTTGTGAAGTTTGGTGGTTCTAGCTTGAAAACTGTAGGAGGAGAAACTGTTTATaaaaagtttatagaataataataataataataataataat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU212066 True 466 lncRNA 0.41 1 6432397 6432862
TU212069 False 430 lncRNA 0.42 1 6432397 6432826

Neighbor

gene id symbol gene type direction distance location
dbndd1 dbndd1,dbnd1,LOC106562278 coding upstream 69248 6324821 ~ 6363149 (+)
foxf1 foxf1 coding upstream 126825 6301848 ~ 6305572 (+)
irf8 irf8 coding upstream 321391 6100753 ~ 6111006 (+)
LOC103030962 ds22a,LOC108434600,LOC105892932,LOC106562285 coding upstream 336729 6067215 ~ 6095668 (+)
LOC103031281 cox4i1,LOC103031281,LOC108412231,LOC107663352,LOC107731261,LOC107565335,LOC107572641 coding upstream 366864 6063252 ~ 6065533 (+)
gas8 gas8,LOC108276428 coding downstream 49957 6482819 ~ 6488287 (+)
LOC103042367 LOC108435537,LOC105906449,LOC101169526 coding downstream 298308 6731170 ~ 6759468 (+)
zdhhc7 zdhhc7,LOC108435925,LOC107705792,LOC107573093,LOC107736389,LOC107686620,LOC107662857,LOC107601043 coding downstream 376073 6808935 ~ 6817496 (+)
cog8 cog8,LOC107686577,LOC107573089 coding downstream 390767 6823629 ~ 6828644 (+)
wdr59 wdr59,LOC107686576 coding downstream 406016 6838878 ~ 6858524 (+)
G156435 NA non-coding upstream 1771 6430023 ~ 6430626 (+)
G156434 NA non-coding upstream 4104 6428064 ~ 6428293 (+)
G156431 tubb3,LOC107552791,LOC108272015,LOC108431516 non-coding upstream 20173 6409621 ~ 6412224 (+)
G156419 LOC108434843,LOC108264624 non-coding upstream 48354 6383267 ~ 6384043 (+)
G156402 NA non-coding upstream 115373 6313952 ~ 6317024 (+)
G156438 NA non-coding downstream 8189 6441051 ~ 6441277 (+)
G156451 NA non-coding downstream 66989 6499851 ~ 6501174 (+)
G156499 NA non-coding downstream 238059 6670921 ~ 6671194 (+)
G156523 pdpr,LOC106595780 non-coding downstream 336080 6768942 ~ 6774732 (+)
G156562 NA non-coding downstream 435398 6868260 ~ 6869564 (+)
G156188 NA other upstream 1274997 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 1795107 4575668 ~ 4637290 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other upstream 2500234 3929331 ~ 3932163 (+)
LOC111194753 NA other upstream 2817906 3611018 ~ 3614491 (+)
G155776 NA other upstream 3677285 2738361 ~ 2755112 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 660645 7093507 ~ 7171625 (+)
LOC111194759 NA other downstream 939514 7372376 ~ 7431568 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other downstream 1167705 7600567 ~ 7606668 (+)
G157055 NA other downstream 2137068 8569930 ~ 8570877 (+)
G157383 NA other downstream 3507967 9940829 ~ 9941805 (+)

Expression


Co-expression Network