CI01000012_09400481_09401810 (EIF4EBP2)


Basic Information

Item Value
gene id CI01000012_09400481_09401810
gene name EIF4EBP2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9398076 ~ 9402378 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_09400481_09401810.mRNA
AGAGGCTGAATTGCGCGTAAGCGTATGTGCATCTGATTTGTGAATCGGTAAAGATGGTCAGTGATAAAAAAAAAAACATCTTGTAAGAAAAATGGAAATATCACACTTTTAACGCAGTAACTTTTAATGTGTTCAAAGACAGTTTTATATATTTGCAGCTAAATCAGCCTAAGCTGTTTTGCTGCTCTTAGCTGGTTCACAGCCTAGTCAAGTTGATGTTCACCTGGTTTAGCTGGGCAGCGAATTATTTTCCCAATCTAACCAACTATATCATATTTTTAATTTATATATTATTATATTTTTCTATTGGAGTTCATGCGATGTAATTCTCCTTTGACGTAAAAAAAAAAAAAAAAAAAATCAAATCTCCCTTGACGTCATATCCTCCCAGTGCTCTTCGCTTCCTGCCTGGCGGAGGGAGGGGACGGTGCTGACGGCTGGGAGGACGAGCTGAACGTTAAGAAAGCCTTGGGAAAGCGATAAGAAACGAGGGGAAAGGGCCCGAGGTTTTTACCTTCCATCGGGAAAACTTATCGCTCGACTCTGATTAGCACCCAAAGCAAGTGCAATGTCGTCCAGTCGTCAGTTTAGTGAGAGCAGGGCCATCCCGACCAGGACGGTGCTGATCAACGACTCAACGCAGCTACCTCACGACTATTGCACCACTCCTGGAGGCACTTTATTCTCCACCACCCCGGGAGGAACCCGAATAATCTATGATCGCAAGTTCCTATTAGACCGGCGTAACTCACCCATCGCCCAGACCCCACCAGCACACCTGCCGGTTATCCCAGGAGTGACGGGCAAGAACATCCTCAATGAAAACAAGAGGAATGAAGCTAACAACATCAACAACCATGATGCCAAACCAGGGCAAGCTGAAGATGCTCAGTTTGAGATGGACATCTAAAGAAGAGGAACCAACGTGAAGAACGATTAATTACCTGGTACCTGTGTGCCAGTGGCTTGGCTTGTAGAAACCAATGTTGTGAGCCCTCTCTTTTAGCTCTCTCTAGCTGCTGGGTGCTGCATAATCATGGGGATAAA
>TU85327
GGCGGAGGGAGGGGACGGTGCTGACGGCTGGGAGGACGAGCTGAACGTTAAGAAAGCCTTGGGAAAGCGATAAGAAACGAGGGGAAAGGGCCCGAGGTTTTTACCTTCCATCGGGAAAACTTATCGCTCGACTCTGATTAGCACCCAAAGCAAGTGCAATGTCGTCCAGTCGTCAGTTTAGTGAGAGCAGGGCCATCCCGACCAGGACGGTGCTGATCAACGACTCAACGCAGCTACCTCACGACTATTGCACCACTCCTGGAGGCACTTTATTCTCCACCACCCCGGGAGGAACCCGAATAATCTATGATCGCAAGTTCCTATTAGACCGGCGTAACTCACCCATCGCCCAGACCCCACCAGCACACCTGCCGGTTATCCCAGGAGTGACGGGCAAGAACATCCTCAATGAAAACAAGAGGAATGAAGCTAACAACATCAACAACCATGATGCCAAACCAGGGCAAGCTGAAGATGCTCAGTTTGAGATGGACATCTAAAGAAGAGGAACCAACGTGAAGAACGATTAATTACCTGGTACCTGTGTGCCAGTGGCTTGGCTTGTAGAAACCAATGTTGTGAGCCCTCTCTTTTAGCTCTCTCTAGCTGCTGGGTGCTGCATAATCATGGGGATAAATGACTAAAGTTTGCCCAGTGGGGCTGCTGGAGCCCTGAAGGTTAACCTGTGAGCCTGTTGAGCTCTTTTTGTTTAGGTTTCAGGGCTGCCAGCAGCTGTACTTGCTTAAGTCACAGAGCAAGGGAAAAATTCTTTATTGTAAGTGCCCGGATATATTACCAATTTACCGTAATAGTCTCATAAACAAATCAGCCATCAGAGATTCACTGCTGATAGTTCAGAGTACACTGTTCCAGTTGATACCCTTAATGCAGTCTACTTTATTCACATGTAAACTGATTTGCAGTCAAGTCAGGAAATGCAGTTATCTGCATGTTCATGTCCTCCCAAATGTAATATGTATATATATATATATATATATTTTTCCCCCATCCAAAACGGTTACTGGATCTTTTTTCCCCAGTTTAATTTCAAAGGGATTATCATAATAATCATAATTTTGATTCAAAGTGAAAGAATTCTATATTCATTCCAAGTCTTTTATATCAGTTAAAACTTTTGTCAGGTATTTGTTCAGCTCAAAAGAATAGTTTTATAGAATTGTCCAAAAACATTGAAACCACAAACCTTAATCACTCATTTGAATTTTTACAGGATTATGATGCCAAACAAATGTATACACATTTTTGAATCTTATTTAGAACTACCCCAAAATGAGCATGAGCAAATTCTTTGAATTTCCTTTTGCCCAGTGTAATCATAAAGTAAATAACATCTGATCACAATTTTGAATGACCAAACTGATATTTTAGGGCAGAGAGAATGTTTCCGTTCAGATTCGTCCTGCTAACAGTATGGTTTGTACTTACCTTTGCATGGTGAGATGCTTGAAACGTCAACATCAGCTCTGTTGTCACATCCTCTGGTAAAAGGTAGACAATACCCAGTACTGTTGGACTGGATCAATGGTTTAATATACTTTATGAAATGATGACAAAAAAAGAGCTGGTCTCAGGAAGCACTTGCATTATGTACCTAACAAGTACACATCTTATGGCTCCTTTCAGGGGAGAAATAGGGCGGTGAATATTTAACATTAATATCAGCTGTGACATCTGCTGTCACTTTCCAATTACTACAATCCTTACAAACCTTGATAATCAAATCAAAGGTAGGAAAGCACTGAAGTGTTGTTTTGGTCATTTTACTATTGTCTGTCTCACAGCCACACAATGTGAACGATTCTTCAAAAGATGGATAGTTTTGTAGTGACCAGACATTCATATTTTGATTCAGATCAAACATCTTGAAAACTTGAATTGAATCTTTCCAATGCTCTTCTATGCATGTTCTTTTAGTCTTTAGTTCACATGTCAGATCATTTAATCGATGTTGAATTTTTTGGGGGATGCCAAATCTTGTGGAAGACAAGTAGGTTTGATTAATTTTGAAAGAGAATTAAGCAAAGAGATTATCCAAACAAAGTGACCTAAAGAGGATAATACTTATTCTCATGACTTTAATTGTCTCTTTCTGTGCTCCAGTCATTCTCTGAAGCACAGAATGTTTTTTTTTCTCTCTCTCTCTCTTTCTCTCTCTCACAGTGATCTTGTGCTTAGCCTCTGTATCCATGCCTTACTTTACTAAGCTGAGCAGCTGTGTCAAATACAGTTCTCTTTCATACATTAAAACAGGATCAGTTCCTTTCTGTTTAATTTCTTTCCGACTTTCAAGTTGAGGATACGATCAAGATATTGCTATGTTTTACTAGAAAACATTTATATTTTTGGAAACATGTTTGTTACCATTTACTTTCTTACAGAGATGGGAAGATTTGCACATACAGCAGTGTAATGTTTGTAACAGTAAGGGGTTGGTTAAAAAGAAATGCAGTTTAGGTTTGACTTTGATCAGTTGCAGTTAAACTTTCTATCGTGTATTCAATACTGGTGAAATCCTTCACAATTAGATGCCCAATTTTCCAGTTTAAATCAGACTTTTGTAAAAGTAACTTTTAAGTAATAATGGTTTACAGTAAAGGAAATCTATATTATACTGTCCTTCTGTAATAGATTTGAGTTGTCAAATCCCAGCTTGTTTCAACTCTGCAATATGGAGTTTAAAATTATTTTTGTTTAAAGATTTAAAGCTTATTTTGCTTCATACTTTTCCCAGGTCTCAGAAACTATCAGAAATGCATTTAGCTCTGTATAAGGGGATTTAGGATGGAAGTGTTTTATCTAATGTGGTGGAAATTGGAAACTGTATTTTCTTTCTTCTTTGAGACCCTGTTCTGTTTAATTTTAATGAAATGCCAATGCCAGTGGA

Function

symbol description
eif4ebp2 Predicted to enable eukaryotic initiation factor 4E binding activity. Predicted to be involved in negative regulation of translational initiation. Predicted to act upstream of or within negative regulation of translation and translational initiation. Predicted to be active in cytoplasm. Is expressed in brain and head. Orthologous to human EIF4EBP2 (eukaryotic translation initiation factor 4E binding protein 2).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_09400481_09401810.mRNA False 1047 mRNA 0.45 3 9400344 9402378
TU85327 True 2905 TUCP 0.38 3 9398076 9401968

Neighbor

gene id symbol gene type direction distance location
CI01000012_09379379_09394499 PALD1B coding downstream 5294 9379151 ~ 9395050 (-)
CI01000012_09358336_09370502 NA coding downstream 29724 9358098 ~ 9370620 (-)
CI01000012_09306970_09313413 NA coding downstream 84631 9306591 ~ 9315713 (-)
CI01000012_09164233_09178383 ZMIZ1, ZMIZ1A coding downstream 221076 9164101 ~ 9179268 (-)
CI01000012_09082056_09083285 NA coding downstream 316861 9081877 ~ 9083489 (-)
CI01000012_09419200_09460604 SPOCK2 coding upstream 16717 9419095 ~ 9461288 (-)
CI01000012_09465977_09473475 DNAJB12A coding upstream 63570 9465948 ~ 9473475 (-)
CI01000012_09513757_09517777 CUEDC2 coding upstream 110890 9513268 ~ 9517777 (-)
CI01000012_09589749_09615649 PAX2A, PAX2 coding upstream 186066 9588444 ~ 9615649 (-)
CI01000012_09754856_09756772 CHST3A coding upstream 352217 9754595 ~ 9756956 (-)
G74921 NA non-coding downstream 59939 9340200 ~ 9340405 (-)
CI01000012_09001061_09005079 CXCL12A, CXCL12B, CXCL12, A-SDF1A, SDF1 non-coding downstream 393554 8998826 ~ 9005079 (-)
G74887 NA non-coding downstream 405445 8994610 ~ 8994899 (-)
G74885 NA non-coding downstream 406924 8993221 ~ 8993420 (-)
G74882 NA non-coding downstream 409098 8991038 ~ 8991246 (-)
G74824 NA non-coding upstream 71926 9474304 ~ 9475994 (-)
G74953 NA non-coding upstream 84889 9487267 ~ 9487594 (-)
G74954 NA non-coding upstream 85492 9487870 ~ 9488107 (-)
G74957 NA non-coding upstream 88024 9490402 ~ 9490617 (-)
G74955 NA non-coding upstream 90674 9493052 ~ 9493918 (-)
CI01000012_09071892_09073410 NA other downstream 326887 9071371 ~ 9073457 (-)
CI01000012_09068458_09070536 NA other downstream 329677 9067906 ~ 9070765 (-)
G74701 NA other downstream 1032701 8367019 ~ 8367643 (-)
G74648 NA other downstream 1134690 8264329 ~ 8265654 (-)
G74982 NA other upstream 173270 9575648 ~ 9576149 (-)
G75608 NA other upstream 1209537 10611915 ~ 10620871 (-)
CI01000012_12047175_12052116 NA other upstream 2646666 12046728 ~ 12052541 (-)
CI01000012_12079581_12084139 NA other upstream 2676558 12078936 ~ 12084260 (-)
CI01000012_12954694_12954954 SF3B5, BRAFLDRAFT_284483 other upstream 3552068 12954446 ~ 12957833 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006060 eif4ebp2 coding NC_007124.7 CM002897.2 30163515 ~ 30168897 (+)
grasscarp (Ctenopharyngodon idella) G259769 NA non-coding CI01000062 null 1888772 ~ 1889031 (-)
tiger barb (Puntius tetrazona) eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 misc NC_056711.1 CM032080.1 10964855 ~ 10968914 (+)