G157027


Basic Information

Item Value
gene id G157027
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 8432614 ~ 8438269 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU212918
ttttttttttgttgtttttttatttttggtttttacAAGTTTCATTTTTAAAGATACAAGATAGATAGTTTGTCATACTGCTGCTGTTGGTCTTGGTATACAGTGAGGGACTGCATTATGTACTTGAAGTCCAGaggttttgtatttattgtattccttCATCTACCCAAGCTGTATGTGGTCCAGGAGTTTATGAGCTGTTCTGCCACGATAATACAGAAGGGTACAGTTTTTAATGGCCAATAGAGGAGTGTAAAATGCTAGAGTGCTAGAATGCTAAAACGCGGACAAAACGTGTCGAGGGATTCGTTTTTGTCTCTGGACGACGTTTATGACGTGATGCCTGAATGGAAAACAGCAGAATATTGGAAATGTGGGATCCTGATGAGAATCCTGAACCTGAAGAATCTGAACTGCCTGTGCTCACCTCATTGATGAGCCAGATGAGCTGATTGGACGGATAGCGGTATGGATGGGACAGGTAGCATTAAATGTGAATGACTGCGTGGCACATGGactggtgggtgtgtgtgtgtttgtatggatGACAGTAtaacacagctgattcacaggcATGTGTCTTAGCACTCACATGTTACTCAGCACACTGTGACAACACAGCCAACCACAGATGTACAGCGAATTTGTTTGTCGAAGCGcttggaaagaaaaaaataatatacaaatgTATCTATAATTTCAATCAATttacaattttgtgttttacccCCATTTTGCGGTTGCCTTTTCATCGTGGTGAATTATCATCGTAAccgttattattgttatttctttttaaatttacatatttatttcaataaCATACTCAACAGAAAGGACACGGCATGGTCATCTCAACTCTAGAGTATTTACAGCAACCTAGCTGACAGCAAATCACATCAAAAAGTCATAAAACTCGCAGCCCTCCCCTACATGTATCATCAGCACGAATGAACACGCAACGATGGAATCGGATTGCAGGGGCAGTCAGGTAGGTAGTCAGGTGACTGGGGTGAGCGGGACGGGAGCGGCCTCAAGTGTTTTCATCTACAGCTGTGATGGATTTAGTCCAGCCTAAGAGATACTAGTTTACATAGTTATTGGGATAATGAAGCCAGTCTGCTGTATGCTGGGATCCAAGTAAATAGCGAACAACAGGGAAATGCCAAGCTGTAGCACACTGAGAAGCACATATTTGAGAAGCATTTATGTCCatgtatattgattttttttatatttatgaccATCCTGGTGAGTGATTGAAGACCTCTTACCTgcacattttaagtgttttctgcTATAACCTCCCACCACCACTACTGTCAACTCAGGACTCAGGATCTCTATTTTCCCACAATGCATTGTGAAAAGGAAAGGGAAAAGCTACTCACTCAAGTGCAGCttataacttacagtaacaTATTTTGGCATAGCATCGCTTGATGACTTTCCGTAAGTACAAAACAAACAGGAGTTAGtatgttaatattttgtgtactaaCCTGCCCAACCTGCACTATAAAGACTggaaaatagtattaaaaaaattggTGGATGCAaacaattaggggtgtgccatatcgtatcgtacgcaataatatcgccaacatttttgaatatcgtatattatatctgcccagtatgatttattttacttaatcctggatatatatgaagatatatggagtgcattattatcatGGATCTCTGTATCATCATGTATCATGGAATTCTGAATCATTGAATTGTGTTACAAATCTAATAttaatttttcatatatatatcaATTAGGGGAGTGCCATATCATGTCATATgctataataaaatttaattttcattttgtttcagtAGTGCATTcttgaaatcttttttttttaattcagtgttttgtcatatcgccaagaatattgttctcgtgaaaataccatgaaatatcgtgatattattttagagccataatGCCCACCCCTACAAACAATGCAAGTGCTGCAGCAGCAACGGCAGTTCAAGAACCTAGAGTGACATATTTTGGCATAGCATTGCTTTATCACTTTGTGTTCATGGCAAACCAGCACTATTAAGATTAGCATAGTTTTAGTAAGTGATTCATTCACATATCATCAGTTAAAATTGTGTGATTGGTAACTCATTTATTTCCACAAACAGTATTTGGTGATTTGATGAAATTAATGTCAGATATTAACTGTAAATTAACAGATATGTTATTTGTTTTCGCTGTCTGGgtcgaccagaggaggatgggttcctccTACTGGTCTTACtgggttccttccaaggtttcttcctcctagTATGTGCCAATGTTGGCACTATCACTGTGGTGCTTATTTACTCATAAGAGGCTTGGACCTGTAtctttgtaaagctgctttgtgacaacatatacataaataaataatatgttaaataatatattatatataaataaatacaaaatgaatttgaattgaattgtaaAACCTGTATCAGACCAGTAGGGGGCTCCCTTCTCTGAGAAAAATGatgactgtgtgtttgtgtgtggtggagTGATATTCGAGTCAAGGTTAGGGCAAGGACTAGAGATAACACCATAACgaacagaaaaacacatactgtgtctgtctgtctgatcaGACTGATAAGGAGGAATGGAAAGCACTGCTATTGTACTGCGCATATTAATCAGATATAGAGAGATATCCAGTAGAGTAgcccatttggtggaatatgtTCTCCGTAGTGGgctattatgttttatattgcaTTATAATAGCAGGTTCCATCAACCGGTTACAATTGCTCACTGGCACTGTTGGACGGAATGTGAAAAATCCATCATAAAGCACTATATTCAAGTCTTTTATACCTTTTTATACCTTTATACCTGCTGTTGTGACCTACTATTCCTGTGATCAGCACAATGAATATGCACTGTAGAACTAATATAAGCTAGAAAATGTGTGGTTTCATTCCGAATGGATGTTAAAAATTCACTCAAAATTTGTAAGGGTCTATTTAGTATTTACTCCATTATTTTAGTCTGATGGTAAACTTGCAATGTTGGACGTTGTGGCCTAGCATCCCTGTGGTCCGCACAATGAATATGTGTGACATACCTGTATGTATAAGCTGTATAACTAATATAAGctgtaaaatgttttctttttgtctgtatTGACATTAAGAACAATTTGCTTGGCGATAGCATGGCCTTAATTATACAAAAATTAGAGTTTACTATTCCTTTAATTTAGTCTGATGGTAAACTTGGCCTTTGCTGTTTGCTGCACAGGCACTGTTGGACAGAGtgtgaaaaaatgaataatatgaatatatattataaacaaaaatgactatttttttttttcaattttaataaTTCTGATGCATACCTGCTGTTGTGGCCTTCTTGTATTCTTGTGATCAGCTCAATGaatatgtgtgacatactgtatcTAATCTAATATAGCTGACAAATGTTTGTTTCCATTCTGAACTGATGTAAACCTAgtagatgttgtagatgttttGCTGTTTGCGGTTTGTGAAATGATCTGTCGGATGAACGCTGCACCCCTCTGGCTACTTACACACAAAACATCTCTACCTGTTAGCCTTCAATGCATGGAGCGAGGATGGGGCCTAAGCAACTCAGCAGCATTAAGCACTGAAGCACAGCCTGAGAATTAGCCTACCGAAGCTTTAGCCGAGATTTTCAGTTTAGTACAGTTTAGTATCTACAGAACCGTGCACGGCCGATGCTACCTGGCTCTCCATTCTCAGGCTAACACACAGGCCTTCCTGGTCACCTGCAATCCTCTCCACGCTCCCGTTCGCTGATGGAGGGTGCTACTTACATACAGTAATGTAACGAAGCGTCCGTAGTAGTCACCTACTGTctctaaatatacagtatttacaccaTGGTAGAGTAAGAATGCACACTGAACCTTCCACTACAGCGAGCAGGCAGTCATGAAATGACTAAATCCCTGTTCAGTACAGACGCCCTTCCAGTTGTCCGTTTCAGTACAAACCTAATTCAGCGTATTTCAGAGTCAAACGAATACATATTTACAAACGAAACCCGTCCTTCTAAAACAAACGTCAAACTCATGACTTATCGTTTTACGTATTTCCtgtatgtgtaatatgtgtgtattCTGTGAGCATAACCCTCAAAGCCATGCATtaaaacatgtgaagtcataTTTTGTCATTTCTAAACTTCTGGAGAaggaaagaaatagagaaaaaaattataaaaaaaaaagaaacgcatTGGTAGTATCTCAACCAAGCCATGTCCCTAGGACCTACATCATACAAAAGTTAAAGAAACAGGCAATCCATTTCAAGGATGTAGAATCAATAAAAcaagagtaaagaaaaaaacaaacaaggaatTAAATAAACGGACGCATCACTAAGGTCGAGCCTACGTGTTCTGCTCAGTTCAtgtagagacagacagacagagagatagatagatagatagatagagaaatagagggatagagaaagacagggagagagagaaaaggagagagagaatagtcGAGGCCTATGTTACATCCAGTAAAGGCCACCAGTCGCCCCCACGTGGCCAAATCTGGAAACAGACGTCTGTCGTTATGGACAGCGGTTGCCATGGTAACTTCTCTCCAGCTCTACTCCAGGTAGATATCCTCTGTGGGACAGGCGTACTCCAGATGCTCCTGATAATACTCCTGAAACGCCCGTctgcaatacacacacacacacacacacacacacacacacacacatatatacatacactcatTAGGACAAATACTGGATACTGGcttttcaaaatgatacagtatcaGTATGGCTGTATGGGCCAGTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU212918 True 4874 lncRNA 0.38 3 8432614 8438269

Neighbor

gene id symbol gene type direction distance location
arsa arsa,LOC100304877,LOC102794702 coding upstream 561 8423666 ~ 8432053 (+)
LOC103028908 NA coding upstream 130834 8291162 ~ 8301780 (+)
rabl2b rabl2b,rabl2,rabl2a,LOC107662875,LOC107600941 coding upstream 551654 7875024 ~ 7880960 (+)
odf3b NA coding upstream 566036 7862072 ~ 7866578 (+)
LOC103032733 LOC108439982 coding upstream 572104 7851925 ~ 7860510 (+)
pgc LOC108440932,LOC108441008 coding downstream 28604 8466873 ~ 8474471 (+)
chkb chkb,LOC107577700 coding downstream 56571 8494840 ~ 8507495 (+)
LOC103026556 LOC108264446 coding downstream 70135 8508404 ~ 8513431 (+)
cpt1b cpt1b,LOC100329197,LOC107599889,LOC107671150,LOC107686536 coding downstream 81749 8520018 ~ 8533167 (+)
prpf18 prpf18,LOC107671164,LOC107719961 coding downstream 116919 8555188 ~ 8565498 (+)
G157022 NA non-coding upstream 70864 8361520 ~ 8361750 (+)
G157019 NA non-coding upstream 75537 8356218 ~ 8357077 (+)
G156917 NA non-coding upstream 571974 7846615 ~ 7860640 (+)
LOC107197493 NA non-coding upstream 582736 7846483 ~ 7849878 (+)
LOC107197499 NA non-coding upstream 587791 7841657 ~ 7844823 (+)
G157052 NA non-coding downstream 128160 8566429 ~ 8567668 (+)
G157054 NA non-coding downstream 129975 8568244 ~ 8568463 (+)
G157064 frmd4a non-coding downstream 165320 8603589 ~ 8608021 (+)
G157069 NA non-coding downstream 242540 8680809 ~ 8683103 (+)
G157210 NA non-coding downstream 453821 8892090 ~ 8894941 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other upstream 825946 7600567 ~ 7606668 (+)
LOC111194759 NA other upstream 1001046 7372376 ~ 7431568 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other upstream 1260989 7093507 ~ 7171625 (+)
G156188 NA other upstream 3275214 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 3795324 4575668 ~ 4637290 (+)
G157055 NA other downstream 131661 8569930 ~ 8570877 (+)
G157383 NA other downstream 1502560 9940829 ~ 9941805 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other downstream 2134474 10572743 ~ 10591523 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other downstream 2262519 10700788 ~ 10713982 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other downstream 2313430 10751699 ~ 10754698 (+)

Expression


Co-expression Network