G157305


Basic Information

Item Value
gene id G157305
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 9343831 ~ 9344700 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU213278
ctaatcttctcctgtaatgtttcacaagatgggagaatacagaactccaaacgtttgcgtttatgattgtgagtgagaaatggtttcttccgtgcatgcctcccaaacagcttgttggcatgtagatagcgcctgatggttgttttggagactttgtgaccccaagaagctaccatttgttgcaattctgtaacagtgagctttggagaactttttatttctcttatcatcctcctcactgtgtgtggtggcaaaataaacttgcgtcctcgtccaggcttgtttaccactgttccagttgttttaaacttcttaataattcctctgacagtagatatggaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU213278 True 343 lncRNA 0.41 2 9343831 9344700

Neighbor

gene id symbol gene type direction distance location
lrrc4 lrrc4.2,LOC103033525,LOC108442864,LOC108263937,LOC107559378,LOC107594935,LOC107738417,LOC107672593,LOC107673147,LOC107723939 coding upstream 44416 9294573 ~ 9299415 (+)
LOC111194762 NA coding upstream 227755 9113979 ~ 9116076 (+)
LOC111194832 NA coding upstream 229777 9110094 ~ 9114054 (+)
rbm28 NA coding upstream 423853 8904735 ~ 8919978 (+)
LOC103031618 NA coding upstream 440872 8897577 ~ 8902959 (+)
LOC103035018 grm3,LOC108444204,LOC108263977,LOC107671160,LOC107665551,LOC107559415 coding downstream 1121089 10465789 ~ 10529492 (+)
cmip cmip,LOC107684659,LOC106573687,LOC106560887 coding downstream 1250702 10595402 ~ 10628479 (+)
tmem5 tmem5,LOC107722461,LOC107738400,LOC107587049,LOC107559810 coding downstream 1413540 10758240 ~ 10764110 (+)
srgap1 srgap1,srgap1a,LOC107670373,LOC108264626,LOC107684655 coding downstream 1421315 10766015 ~ 10901559 (+)
LOC103045650 NA coding downstream 1558253 10902953 ~ 10912967 (+)
G157226 NA non-coding upstream 377460 8966171 ~ 8966371 (+)
G157224 NA non-coding upstream 394734 8948825 ~ 8949097 (+)
G157210 NA non-coding upstream 448890 8892090 ~ 8894941 (+)
G157069 NA non-coding upstream 660728 8680809 ~ 8683103 (+)
G157064 frmd4a non-coding upstream 735810 8603589 ~ 8608021 (+)
G157311 NA non-coding downstream 48602 9393302 ~ 9393516 (+)
G157312 NA non-coding downstream 159374 9504074 ~ 9507133 (+)
G157334 NA non-coding downstream 240506 9585206 ~ 9590572 (+)
G157387 NA non-coding downstream 682819 10027519 ~ 10027906 (+)
G157388 sema3a,sema3ab,LOC108264812 non-coding downstream 704111 10048811 ~ 10053975 (+)
G157055 NA other upstream 772954 8569930 ~ 8570877 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other upstream 1737163 7600567 ~ 7606668 (+)
LOC111194759 NA other upstream 1912263 7372376 ~ 7431568 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other upstream 2172206 7093507 ~ 7171625 (+)
G156188 NA other upstream 4186431 5157154 ~ 5157400 (+)
G157383 NA other downstream 596129 9940829 ~ 9941805 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other downstream 1228043 10572743 ~ 10591523 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other downstream 1356088 10700788 ~ 10713982 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other downstream 1406999 10751699 ~ 10754698 (+)
hipk2 hipk2,LOC107722467 other downstream 1686365 11031065 ~ 11143471 (+)

Expression


Co-expression Network