G157312


Basic Information

Item Value
gene id G157312
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 9504074 ~ 9507133 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU213288
cccacacactgctgccacTCTCAACACTCAACCCATATCATGAAATCTAAGGAACTAAGTCATTGAGCATTTTATGAAATTTTCAACATTTATAAAGTATCATGAAAGAACAACTGCTAGATTTAATTtgtcaaaaaactaaaacatattGGCAAAATCTACACATCTATGAATCCAAAATCTTTGTGCATGCCTATAATATTATCAGTTTTCAGTTTAACAGTGCTGTTCAGTGTTGCTGTCTCCagacattttatgttttatgtgctTAATGACATAATTTGAATCTATGCAATGTATCACaatttcttgataaacggaccaataaaaatgtcCTTAAACATACATCTGGAAGAAAAGCTTATTACaatttagaatgtttttatttgttgtatttgtattgtaatttATCAGCATTTACTGATTACTAATCCTTTTTCAGGGATTGTTTAACTCTGAGGCCCGTGCCAGAGGACGTACGTACAAATTAAACTCACGTAATGAGCGTCAGGAGTGCTCAGAATGCAAACACTTAGGAGCCATCTTTCAGTGCGGTATTTGTTTTAGCTGACATAGTTTTGGAGGTAATTTCCCAAGTCGATTGTTTTTGGAGGCCGTCCAGAGTAAGAGGTCAGGAATGAGAAACTCGTATATTCAGAGTAATCCACGACCACGACCACACAGGAGATATTACTCTGATGGATGGGGATTTGTCTTACAACTTATCCTGGATCTAAAACATTCAAATGAATCTTTCCCTAACTAGACCTGCTTCTTCTGGGCCTGTAGAAgaaaaagtaacaggtatttgttctacataaacacacacacacacacacactctcacactctctctccctctgtcctgCAGAGCTGCAACAACCTGCCAGTGGAAATTTGAACATAACGAACATCACTGAGCAACATTaactacattttacacacatacatacataacacacttacatacacacatatacacaaagtCCCTTACATCACGTTCAAAAGTATATCATACACCACATGGTTACTTCATTAAAACCACCTTCTTTTTCCTACACTTAACTTCACTAACCATATAGGAATACTAAGCACTTCTATAATTACACACTGTAGTCCTGTagttctgtttttctgcacactATATCAGTCtcattatttgggtggtggtgtttgaggtgttatggagacacagcagtgctgctggagtttttaaacactgtgttcactcctctgttgctgcacagcgTGTGTTGGTTATCCTCTAGTTCTTCATCATTTTCAATCCAGcagtgaggtgtttaaaaactccagcagcactgctgtatctgattcactcgtaacagcacaacacacacacaCTATGCTGAGAATGAGTCACAACCCGAACAATACCTGCtctgtataattaaaaaacagggggAAATTTAGGTTTTATGCAGAGAAACATATGAAATATAGTTACAGTCTACGCAACTACAAAGTGTTCATATATGCTtagtggagctgataagatggCCAGTGAACGTAAAAACAAAAAGGCGGTTTTAATGCACCAATCAGTCGGTGTACACTTAAAGCATACTTTGCATTTACTTTGTATGTTTACACCCTCTCTATTTCATTTCAGGttgtcttttattctttatagtGGCAAATATAGTGGTTTTGTCTAGTTTTGGTCGAGAACGAACAACAGAACAACACTGAAGatgaaggaaaaacatcttaaaGCCTCTACTTAAAAGGTCTATAAGACCTACCCAAGCATCAGTAGTGTTTGTAACACTCAAATGACTGCACTATTTACAACACCTCATCCTTCTATGGCttctgaaacaaaaacaaaaacgaagaaagaaaaaaaagaagaagaaaaagaaaagatgacaaaaaaaaaaacattgtgtgaATTGGaagacacacaaacaacactgcTCTCTGGTCAAGAACTAAAACACCTGCCTGCAAAGCCTTCAAAAACCTTCTGATACCTGAAATGAGGAAGTGCCATTAGAACAGACAGTGTTGTACATTGTTGTACGTGTGTGTATTCAAGTATTATCAGGAGCATTAACATTAAAAGCCTTCTATGAATACTCTGTACTAACTATACTATCCACAAGATATTCTACATGtatactatatacacacacaccattctgTAATACAGCTAATACTGTGGGGtattttttattcctattttatAATAAAGCTGAGCCCTAAGAAGGACTTAATTGGTTACCTCCATAAGGGTTtagtttaaatatactgtacatgtgtTAGTATTTTCTGAGAAGTAGTTCTCCGAGTATGAAGGTCTAGGTATGAATCCATCTTTCAGATTCTAGCTCAGGTCAATTCCTCAGTCCATAAATCCTCATTTTCTTGGTCCAGCTTTTAGTATGATGGGCCATGAGTAAGCCGATAACGGGAAGAAAAGAGAATATGTTTGATTATTTGTGGATAGAGCCAACAATATTCTCCTCCAGAATCTGAGGTTTTTGGTAAGAGTTCAGGTATTGCTAGCGTCCTTAGGTGCAGGATCTGGCAGTACTCACCAGTAGTCCTTCTTGCTCTTTGCTTATATTATAAACAAGCCTTTAGAGACTCAAGTTGTTTCTCCACTGTTTCTCCATTGGTTTCTTTGTGTAGAGCTCCAGTAATGCCTATGTGAAGCATTCCCAGGCTGAAATAGTTctaaatcaatcaatccataTGTTAGCCAGGTTTTTCCTTATTAAAACTTTGTGGGTCAGGTCGGTTTTGTTGGTTTTGTTTAAGATGTTTGGTTTGGTTCCTCTAAATAGTCCAGTTTTAGGTCATCCAACAGTCTGCTTCAGTAATTAAAGTCTGAGTAGGGGTAGGTTTTGAACACTTTATGAATCCAGCCAGTATAGTGGGCTACGTTGACAAAGATGCCTGGTCGATTGTGTCGAGCACATCCTCTCCCGTGGATACTTACTCCCACTATGACTTTACTTCCCTTTTCTTGACACA

Function

NR:

description
60S ribosomal protein L3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU213288 True 3000 lncRNA 0.37 3 9504074 9507133

Neighbor

gene id symbol gene type direction distance location
lrrc4 lrrc4.2,LOC103033525,LOC108442864,LOC108263937,LOC107559378,LOC107594935,LOC107738417,LOC107672593,LOC107673147,LOC107723939 coding upstream 204659 9294573 ~ 9299415 (+)
LOC111194762 NA coding upstream 387998 9113979 ~ 9116076 (+)
LOC111194832 NA coding upstream 390020 9110094 ~ 9114054 (+)
rbm28 NA coding upstream 584096 8904735 ~ 8919978 (+)
LOC103031618 NA coding upstream 601115 8897577 ~ 8902959 (+)
LOC103035018 grm3,LOC108444204,LOC108263977,LOC107671160,LOC107665551,LOC107559415 coding downstream 958656 10465789 ~ 10529492 (+)
cmip cmip,LOC107684659,LOC106573687,LOC106560887 coding downstream 1088269 10595402 ~ 10628479 (+)
tmem5 tmem5,LOC107722461,LOC107738400,LOC107587049,LOC107559810 coding downstream 1251107 10758240 ~ 10764110 (+)
srgap1 srgap1,srgap1a,LOC107670373,LOC108264626,LOC107684655 coding downstream 1258882 10766015 ~ 10901559 (+)
LOC103045650 NA coding downstream 1395820 10902953 ~ 10912967 (+)
G157311 NA non-coding upstream 110558 9393302 ~ 9393516 (+)
G157305 NA non-coding upstream 159374 9343831 ~ 9344700 (+)
G157226 NA non-coding upstream 537703 8966171 ~ 8966371 (+)
G157224 NA non-coding upstream 554977 8948825 ~ 8949097 (+)
G157210 NA non-coding upstream 609133 8892090 ~ 8894941 (+)
G157334 NA non-coding downstream 78073 9585206 ~ 9590572 (+)
G157387 NA non-coding downstream 520386 10027519 ~ 10027906 (+)
G157388 sema3a,sema3ab,LOC108264812 non-coding downstream 541678 10048811 ~ 10053975 (+)
G157437 NA non-coding downstream 713533 10220666 ~ 10220969 (+)
G157483 NA non-coding downstream 999784 10506917 ~ 10534978 (+)
G157055 NA other upstream 933197 8569930 ~ 8570877 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other upstream 1897406 7600567 ~ 7606668 (+)
LOC111194759 NA other upstream 2072506 7372376 ~ 7431568 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other upstream 2332449 7093507 ~ 7171625 (+)
G156188 NA other upstream 4346674 5157154 ~ 5157400 (+)
G157383 NA other downstream 433696 9940829 ~ 9941805 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other downstream 1065610 10572743 ~ 10591523 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other downstream 1193655 10700788 ~ 10713982 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other downstream 1244566 10751699 ~ 10754698 (+)
hipk2 hipk2,LOC107722467 other downstream 1523932 11031065 ~ 11143471 (+)

Expression


Co-expression Network