G157388 (sema3a,sema3ab,LOC108264812)


Basic Information

Item Value
gene id G157388
gene name sema3a,sema3ab,LOC108264812
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 10048811 ~ 10053975 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU213382
CTTACAAGAGACATTTATTAGATCAGCAGAATACATgccaaaacaaataatttacagcagcattttttctttttttctctcaccgttcttttctttctccctctgttcaTTCCAGTTAGACCCAAACATTTTGTTGGTTGACAGAAGTgtccttttttttctgtctgaacATCATGTGACCGTATACTTTCCATTAGTAATTTTGTACTGAGACAGTATTATTATCAATACTGTCAATATCAATAAGTCCCACTGGTGAAACTCCAGGTAactgtagtttatatataaaaccaGACTGCAGTGCTACagtgggagagagacagagagtacCATAGGCAGCAGTGCAGCCCTTAGCGAACACTGTATTTGTCACATATCTACGAGTAGGAGTATGTACACCTCGGTAACTGTatttgtaactgtaactgtggACTGCTCTGGTGCCTACAGTCAGACGTGGCACTTACAACATTACTAGCTAGCTACTGTAAACGCTAGAGAAAGGAGTGGTGTGGATAAAAGGGCATTCACATGCAGTTTCTACACATTGGCATTGGACCTTTATGAATATTTCTTCCGAAAATATTGTACAGTAAGTTCACAGCTACATTCTGGTGTGCCTACGTGTGCTTGGGTGCTCGTGTGTTTGTGCGGCAGctgaagaaaacaacaatataactattattattattattattattattattattattattaataaaccaaaataaatgaaCTGTAAAGTTGGCCTACACTTTTAAAATTGAGGATGCTTCAAATGTGTCTTTTAGCAATGCCATAAAATACAATCTTTTGGCTCCATAAAGAACTTTGGGCCTTATTTACCGACAGAAAAATATTCCTAAAACCCACTTAGACCATTAATCATGATAATTGAGACATTAACTAACTTTTTCTTAGATGGGAATTGTTCAAGTTACAATTTACAAGGACAATAGGATTGATTAATATGCACAAACTGTGAAAACATGAATGCGCCCAGTAGGAATAAACATGTCATGGTGTGACTCAGATTGGCAGCGGCTCATCTTCAGACAATCCAGCTTTTGTTTTGGTGGAAACAACAACGAATCTGTGTATGAAGACACCATGAAGATCAATGGTTTCTTGTCAGGTGTCACATTTCCAGAAAGTCTGGTGTCATGGTATTCTTTACAGGCACCTGTAATGTTAATAAGGTCCtgctatttcaacaggacaatactAGTATAAAGACTACTGTCCACATATCTACTGCACATACATGCACCACAGACCTGAACATATTAATGGTCTGAATGtagaggggttggacaatgaaactgaaacacctgtcattttagtgtgggaggtttcatggctaaatagGAGCAGCccggtggccaatcttcattaattgcacattgcaccagtaagagcagagtgtgacggttcaattagcagggtaagagcacagttttactcaaaatattgcaatgcacacaacattatgtgtgaaataccagagttcaaaagaggacaaattgttggtgctcgtctgtgaccaagacagcaagtctttgtgatgtatcaaaagccacggtatccagggtaatgtcagcataccaccaagaaggattaaccacatccaacaggattaactgtggatgcaagaggtagctgtctgaaagagatgttcgggcggacctggattgtatccaaaaaaaacataaaaccacggctgcccaaattacggtagaattcaatgtgcacctcaattctcctgtttccaccagaactgtccgtcgagacaataaatgattgtggtctaaatccagttgtttcagtttcattgtccaacccctgtatttctcAAAAAATCATAGTTTGCAATAATTTATTCCCCCATGGCAACTTATATCTTCCTTttaaatagcattgcaatccaacccttccttctgggtgcaactatttttgccCTCATTCTTTGATGGTGAGTGTAAGAGCAGGACTGTGAAAAACTCTGTGGTTTTAAAACACATCACAAATCTGAAATAGGCTATTTATGTCTTAAAACGTATAAAAATATTAGTAAGATTTTGTTGCATGAGGCTTTGTGTTGTAAAAgtgatgtacagtatgtatgaaTACAATATTAGAAAGTGTTTCTTTATGGATCCAAAGGTGGTTCTTTTATGGCACGGCCCAAGAAATCTTTTGAAGTACCTTTATGTTCATGAGTGTATGGAAAGATCTTGTCCTGGTTGTGTCCAATATCTTATTGCCTTCCCTAAAAAAGAGGCCTTAAAGCTGTCCTGTTTTCATCTCTCAGTGCACTGCAGGGACAATCGCAACCCTCCCTTACGTAACGCCGCTTgcgtcggctctcgctttctctGACCCATATCAAGGACTGCCTGGGAATAGCAGAGGCATCAGAACAGAAGAGCTTTTGCTGTTTACCAAATGAAAGACTCCAGATTACACTTCAGGCTAAGTGTCTTAAAAATAGCCTGGCATAACACATGGGCTGCTGAGTACAGCTGTGCATCAGATGAAACTTACAACACAGGAATAAATATAAGATAGGAAAATGAATGAAGATCTTATGAGGGCTTCTTTTTTATCATCTACAGTCTTTAATATAAAGTTGCTTCAAATGGTCGATTGAGGGATGCCATAGAAAGAAGCACTTTTGGGGCTAAAAAAGTGGCTCATGTTTGTCATAGAGATGTGggtgaatgtaaaaaaaaactttcaaatgataaaaataatttaaaaaatagcttGGTCGTTTTTTGTGTCATATATGTAATGACTCAGAATTGCATCATggtgttccaacaggacaatgcttgacCACACACTGCTGCAATCTCAAGAGCTTGTCTTAAAGActtaatgaatgaaaatgtgtgGTATGCTTTATTAAAACCAAATGTGGTTCTTCTACGGCATCGCTCGCAAAACCATTTAAAGGCAGAAccatttattggttaaaaaaaaataataataataaaaaaaggaaaaacaagaaGCTAAAAGTTAATCGCTCGATTCCTTTCAattaagaaaacaagaaaaacaccCCCTCCTCAAAGTTCGTGACTCAAAAcatatcataaataaaaaattaaaacatcccTTACTTGAACATACGACACCACACTGAAGATGTGCCACTTACTAGACCGTTGTGATTCACATACAAGGATTAAGCAATGTCCACCAGCAGCTTGTGCTTGGAAGCTATTGAGGGAAATCgagtacaaaaaaatgtttatttacacCCCCCCTGCACCCCTAAATGCAGCAGTTTGAGTGAGAGAATGCAGAAAcccctttaataaaataactctCTATTATGCAGTATTAGATATAACTCTGACgaacaaaaaaggacaaaatttaaatattcatcTAAAATATATCTGAAACATGTATTTGTGCTGAAAGAGCTTATTCAGAGGAGGAACACATATTATCCATTGATGATCGGGGATGATTTCTGCTTTGATggttgaaaataaaacaaaacaagacaaaaaaaactggATTGGAGGATGAGGAGAACTGAGAGCTGTAGAGAGGATGACTGTAGACTCTAGACTCTGTAGTGACTTGGTTTGTCTCTCAGCTTTGACCAAtggatacatacatacagtataaatcaTGTCAAAAAAATAGGACCCTACATGAAAATCTGTTTCTTtgacatatttaaaaaacatggaCATTTGATCTTCATATTAACACTATTAAGAGATGGAAGtaatacactgatcagccatcaACTGCTGAAACAGACATGAGACCTAGATTTAGCCATCATAATTTGTCCTTGTCTAAGTATCTCAGATCAAGTCGGTATTTCCAATGTAACCATTGACTCTAAGCTAGTGTTTTCCCACTTCTcaatgcagaattctttcagctgtgtgatgttTCAGCAGGAATGACATGACATGTATATGGTGGATAATTTGCCAAGACCTCCATGAGGCATGATgtttccaccaccatgcttcacaggtATGGTGATACCACTACATCAAGTGTTTCTTTATATTACCTCCATGTCTTAAGACTGTTCAAACAAAGACCAAATATACTGTTCACATGTtcatattaaatacaaaaaaaatgaaggactCCATGggttgttctctttttttttgttcacagtactgtatatctttTAGGTTAAAACACACCCTTAAAATACACAGAATCGGAAGAGGTCTCGTACGCAGTATATGTGCACTGGGAGTGTGCTTAATCTTAAGGAAGATTATAAAGATGGTCGTCGATGGTTTCGCTTCTTCTGTTCTATCTATGATCTATGATCTATGATGTTCCTCACCCAGCCGGCCAGAGCTTCGGCAGAGGCCTGTCTGAAAGACGTTCCTTTTATTCTGCgtaatatttacagaatattaTTGCTGGACGTCGCTGTCCAGTCTGTGTGTGAGGGAATTTTTTCCACTGGCTGCTCCTGGAGTCAAGAGTTTGAGTCTAAAGAGGTAAACATTCCTCCGCACGCGCTCTGCAGGAGAGCTGGAACGTTGCAATAACattgcctgtctctctctccctgtcttcaGCGTCACAGTCTGCAAAGTCttgtctgttgtttttagatTGGATAGTTCAGTCTGTGTTTATCTCTATGTTCTCGGGCTCACACACTGCGGGGCGCCCGCTGCGTCTCGTGCATCCTGCGGTTGCGTCCCTTCTTGCTCTCCTGCAGGAGCTTCCACTTGCTGGCGTGCTGTTGGCCGGTGTGCAGTAGATGGGTGGTGTGGGACTGGCTGGCTTGCAGCAGGTGGGCCTTCTGCCGTCGCTGCTTCCGCTCCCTCTTCCACACCTGCTCGCACAGCTGGTCCACGCTGTTGGGGCTGGGCGGGTCGATGAGGGATAGGAAGTCCTGGTACCACAGTTTGGCGTGGGGCGTCCGGCCGGTGTCCGGTGGCTCTCGGTGAAGTAGCTCGTCCAGTTGGTCGGCGGGGATGACGTGCAGGGTGAGGCGCAGGAGCGTCTGGATGAAGCCGTGCTCAACGGCGTGGCAGTAGTATACGCCCGAGTCCTTCTGCAGCAGAGCTCGGATCAGCAAACCCTGCTCAGTGCCCATCACTCGCTCATCTGCC

Function

symbol description
sema3ab Predicted to enable chemorepellent activity; neuropilin binding activity; and semaphorin receptor binding activity. Acts upstream of or within branching involved in blood vessel morphogenesis; branching morphogenesis of a nerve; and motor neuron axon guidance. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in brain; myotome; pharyngeal arch; and somite. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 16 with or without anosmia. Orthologous to human SEMA3A (semaphorin 3A).
sema3a Predicted to enable chemorepellent activity; neuropilin binding activity; and semaphorin receptor binding activity. Involved in negative regulation of neuron projection development; olfactory bulb development; and regulation of axon extension involved in axon guidance. Predicted to be located in extracellular region. Predicted to be active in axon and extracellular space. Predicted to be integral component of plasma membrane. Implicated in hypogonadotropic hypogonadism 16 with or without anosmia.

NR:

description
PREDICTED: semaphorin-3A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU213382 True 5126 lncRNA 0.41 2 10048811 10053975

Neighbor

gene id symbol gene type direction distance location
lrrc4 lrrc4.2,LOC103033525,LOC108442864,LOC108263937,LOC107559378,LOC107594935,LOC107738417,LOC107672593,LOC107673147,LOC107723939 coding upstream 749396 9294573 ~ 9299415 (+)
LOC111194762 NA coding upstream 932735 9113979 ~ 9116076 (+)
LOC111194832 NA coding upstream 934757 9110094 ~ 9114054 (+)
rbm28 NA coding upstream 1128833 8904735 ~ 8919978 (+)
LOC103031618 NA coding upstream 1145852 8897577 ~ 8902959 (+)
LOC103035018 grm3,LOC108444204,LOC108263977,LOC107671160,LOC107665551,LOC107559415 coding downstream 411814 10465789 ~ 10529492 (+)
cmip cmip,LOC107684659,LOC106573687,LOC106560887 coding downstream 541427 10595402 ~ 10628479 (+)
tmem5 tmem5,LOC107722461,LOC107738400,LOC107587049,LOC107559810 coding downstream 704265 10758240 ~ 10764110 (+)
srgap1 srgap1,srgap1a,LOC107670373,LOC108264626,LOC107684655 coding downstream 712040 10766015 ~ 10901559 (+)
LOC103045650 NA coding downstream 848978 10902953 ~ 10912967 (+)
G157387 NA non-coding upstream 20905 10027519 ~ 10027906 (+)
G157334 NA non-coding upstream 458239 9585206 ~ 9590572 (+)
G157312 NA non-coding upstream 541678 9504074 ~ 9507133 (+)
G157311 NA non-coding upstream 655295 9393302 ~ 9393516 (+)
G157305 NA non-coding upstream 704111 9343831 ~ 9344700 (+)
G157437 NA non-coding downstream 166691 10220666 ~ 10220969 (+)
G157483 NA non-coding downstream 452942 10506917 ~ 10534978 (+)
G157513 NA non-coding downstream 605818 10659793 ~ 10660427 (+)
G157523 NA non-coding downstream 646182 10700157 ~ 10700372 (+)
G157540 LOC103039511,LOC100702099,LOC100707594,LOC105905159,LOC108412826,LOC105889141,LOC102291458 non-coding downstream 701104 10755079 ~ 10756662 (+)
G157383 NA other upstream 107006 9940829 ~ 9941805 (+)
G157055 NA other upstream 1477934 8569930 ~ 8570877 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other upstream 2442143 7600567 ~ 7606668 (+)
LOC111194759 NA other upstream 2617243 7372376 ~ 7431568 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other upstream 2877186 7093507 ~ 7171625 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other downstream 518768 10572743 ~ 10591523 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other downstream 646813 10700788 ~ 10713982 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other downstream 697724 10751699 ~ 10754698 (+)
hipk2 hipk2,LOC107722467 other downstream 977090 11031065 ~ 11143471 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other downstream 2286031 12340006 ~ 12366770 (+)

Expression


Co-expression Network