CI01000012_09474489_09475937 (TRMT2B)


Basic Information

Item Value
gene id CI01000012_09474489_09475937
gene name TRMT2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9474489 ~ 9476002 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_09474489_09475937.mRNA
ATGTCGCATGCATATGAAACAATGCGCTTACATTTAACCTGGCCATTGTTGAAACAAATCGTCACTGTACCAAAAACATGCTTCAGTTATTCAATAACCAGCCGTTGTGCTGTCAATACTGGCAGTAAGCCTGTGAAGAGAAGAAATGAAAGGAAACCCAAACTACCTGCTGACTGGCATACTCTTTCCTGGGAAGAAAGACTGGCTGACACTGTGACTCCTTTATGGAGAATGAGTTATGAGGAGCAGCTCCAGTGGAAACAAGAGCAGCAGCACAAGATCTTGCTTGAGATGACAAAGCAACTAGCTCAGGATTCAATGCACTCTTTTTCAAATGACTTAAGATTCCCACTCCTTCCCATAGTAGCCTCACCAGTGAGCGATGGATACCGCAATAAATCAACCTTCTCTGTCAACAAAGGTGTAGACGGTAATCCAAAAACTGTTGGATTTTATATCGGAAATGGAAAAACGGGTAACATAGTCTGTGTCCATGGTGACCATCTCCTGAACATGCCTTCAAAGCACAGCATGGTTGCAAGGTACTATGAAGATTTTATACGCCTCTCACCACTCAGACCATGCATTTTGTTTCATGATGGTGGTCACTGGAGAGAAATCACGATACGAACAAATTCTGCCGGTCACACCATGGCCATAGTCTACTTCCATCCTCAAAACCTAAGGCCTGAGGAGATTGGCATCCATAAAGCTGCTCTGGTTGAGTACTTCTCACAAGGTCCTGGAGCAGTTTGTCAGCTGGATTCTCTTTATTTCCAGGAGAGCACAATGACCCGTTGCAGTAATGAACAATCCCCCTATCAGCTTCTGTACGGACAGCCCCATATCTTTGAGGAGGTGCTTGGCTTCAAGTTCCGCATTTCTGCTGATTCTTTCTTCCAGGTGAATCGGGGAGCAGCGGAGGCTTTGTACAAAACTGTTGCGGAGCTGAATCGGGCTTGTGTTGGGGGCACCCTTCTGGACGTCTGCTGTGGTACTGGAGCCATTGGCATTTCGTTATCCCCACAGATGGAGAGAGTCATTGGCATAGAGCTCATTGAGCAGGCAGTCGAGGACGCCAAGTGTAATGCAGCACTAAACAGAGTTCATAACTGTGAATTTCTCTCAGGCAAAGCAGAAGTTGTTCTGCCAGATATGATGCCCACTTTGAAATGTGATGGCGGGCTGACAGCCGTTGTGAATCCGTCCAGGGCTGGCCTACATTATCGAGTTGTCCGAGCTTTGAGGAATCACTCAGCCATAAGAAGGCTTGTCTATATATCATGCAAACCTGATGGGGAGGCAATGAGGAACTTTAGAGAGCTCTGCTGTGGTTCAGGTTTTAAGAGGAAAATCACTGGAGAAGCCTTCACACCAACTGTGGCTGTACCTGTGGACCTGTTTCCACACACTCCTCACTGTGAACTAGTTCTGGTTTTTGAGCGATAGTGGTTGTTTTTGAAAAAGTGGCTGTTTTGGAATTCATTCCAGTGAATGTCTATTTATCTATGCCA

Function

symbol description
trmt2b Predicted to enable S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity. Predicted to act upstream of or within methylation and tRNA processing. Orthologous to human TRMT2B (tRNA methyltransferase 2 homolog B).

GO:

id name namespace
GO:0008033 tRNA processing biological_process

KEGG:

id description
K15331 TRMT2B, TRM2; tRNA (uracil-5-)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_09474489_09475937.mRNA True 1514 mRNA 0.46 1 9474489 9476002

Neighbor

gene id symbol gene type direction distance location
CI01000012_09412867_09415489 NA coding upstream 58810 9412867 ~ 9415679 (+)
CI01000012_09404096_09407478 PPA1B, IPYR, PPA2, PPA1 coding upstream 66967 9403003 ~ 9407522 (+)
CI01000012_09265527_09287335 NA coding upstream 186888 9264105 ~ 9287601 (+)
CI01000012_09243805_09260096 NA coding upstream 214110 9243048 ~ 9260379 (+)
CI01000012_09215448_09217891 NA coding upstream 255852 9215219 ~ 9218637 (+)
CI01000012_09479056_09484643 SCDB coding downstream 3054 9479056 ~ 9485003 (+)
CI01000012_09487818_09493571 WNT8B, WNT8B.S coding downstream 11816 9487818 ~ 9494246 (+)
CI01000012_09503160_09508216 HIF1AN coding downstream 25949 9501951 ~ 9508376 (+)
CI01000012_09764936_09778598 CDHR1A coding downstream 288580 9764582 ~ 9779401 (+)
CI01000012_09796386_09801947 RGR, RGRA coding downstream 320289 9796291 ~ 9802544 (+)
G74010 NA non-coding upstream 1879 9472208 ~ 9472610 (+)
G74009 NA non-coding upstream 2432 9468807 ~ 9472057 (+)
G74008 NA non-coding upstream 6039 9467491 ~ 9468450 (+)
G74007 NA non-coding upstream 11134 9462893 ~ 9463355 (+)
G73941 NA non-coding upstream 72521 9397908 ~ 9401968 (+)
G74038 NA non-coding downstream 63213 9539215 ~ 9539596 (+)
G74037 NA non-coding downstream 72728 9548730 ~ 9549006 (+)
G74040 NA non-coding downstream 78655 9554657 ~ 9555192 (+)
G74045 NA non-coding downstream 99592 9575594 ~ 9576007 (+)
G74014 NA non-coding downstream 136578 9612580 ~ 9616089 (+)
G73578 NA other upstream 1106862 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 1666634 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 3550184 5922385 ~ 5929186 (+)
G71623 NA other upstream 3657884 5813517 ~ 5816605 (+)
G71548 NA other upstream 3913056 5550493 ~ 5561433 (+)
CI01000012_10223957_10235955 NA other downstream 745953 10223697 ~ 10236276 (+)
G75533 NA other downstream 1668815 11144817 ~ 11145739 (+)
G76385 NA other downstream 3154753 12630755 ~ 12675666 (+)
G76374 NA other downstream 3269529 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 3539504 13029435 ~ 13038899 (+)

Expression


Co-expression Network