G157483


Basic Information

Item Value
gene id G157483
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 10506917 ~ 10534978 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU213517
AAACAGTCATTTATTATATCAAAACCTTGATCAAGTCAGTGTATTTCAGTAGATTTGATGCAGTTGCATGGCTTTCATTTCACTCCAAACACAATAAGAAAAAGGACAAAAAGATATGCATGTATATGAGTTACATCACAAACCTCAAAAGTGTAGGTAACGTGACAGAGAAAACACAGGACCATAGGAAAGGCACTCTTCCTTTCAGAACCAGGACCTTGCCGGAGACTCGTGTAGTGAAGATCAATCTTGGCGGTCCTACACTGTATTAGCATTAAGAAATTAGCATTAAGACATGCTCCTAATCAAGTCATGCTAATCCTGAGCTGTTGGCAGCTGTTCCAGCACTTCGACATGCAGTTCCCTAATTCTAATAAACGAGTGTACAACATTGGCATCTTCCTAAAGATTCGAACAGAATCCAACATTTTTTTGCTTGAGGACAAGAAGGGAAccatgtttgtttactttgtgttaGAATTTTCAGTCCGGTAGCACCACACATCTTCTTCTCTTACCATTTTGTGGAGAGAAACCAACACCAGAACCAACACCAGAAACACCAGATTAGATTAGCTCTTATGAGAGCTTCACAGCTCCCAATACATTCATTCCATAGGAGCCTTGAGGAAAGTATTTTGTCCCCTTCACAAAATGGTTAGAGCAGCTGTATGAATGGAGCTTTTggatgtatatttatataatcaaATGGATCAGTTCAATGGTGCAGTTGTATGGCTTTAATTTCAATCCATTTCACTCTTTCAACCAGAGTTGCAGCTTTTCTTCTTTAAAAGGTAGTAGAAAGAAAAgatagcttagctagctagctgtgtgGTGTACCCACAATATGCTATACAATATCTTTTTGTGTTCAGTTGAAAAGCTACTCAGCTATGCTTTGGTGTAAATCATGGTAAATAGCCTGTTGGAATGTTGAGTTAGCATAGCTAGTTGCTTTAGGATCAGTACTACACAAGCTAGTTACTTTAGACTGCAGTCACTTTGAATATGATACGACCATAAACCATTTGATATGAACCGACCGGAAATTCCACAAATGTGGAACTTGACAGTAAAGTAAACGTGACAGAATAAGGTGGATACATATACTGGTGGACAAATTCACTAATTAAGAGAAGTGTGACAACTGTGCATTTGGGTTGCTCCATTTATATGCATGTCAAAGTGGGtcttaattttcctttttttatcccTGTAAGtctaaatatgtgtgtgtgtgtgtgtgtgtCACCCCCTAGTCCTACAAGCAATATTACATTTTCATACAAAATTAAATgggggagagaaaaacaaaacaaacaaacaaaaacagcagagctgctggagtttttaaaccttGTGTTCAATGTTGTAGACTTAATGTCCTTAATCTGTTGCCGCACAGTTTGTGTGGTTTATCCTCTAGTCTTTAATCAGTGGTTAAATTGTGCAACAGTTGTACCATGACCTTCCAGCCACCCCCAGTCCCACAAGCAAATCTCACATTTTTATacaacattaaaaattaaaaaaacacaacaaaacacaaacaacaagaaaaacaaagacagaTTGCACAGTGACACGATGATGACATCAAAGAAAACCATCCCACGGGGTCTGCTCCGCCACTCTGGTCCAGAACAGAGTCAGCCCAGAATCCCCAGAAGGGCCCCCTCCCACCTCCGGGAGTCCCCCAGGGCTCAGTCTTAAGGCCACTGCACGTACACGTTGGCGAGAGAAGAGGGGCTTcaaagtatccatccatccatctgtctgtccgtccatcCAGTTCTCGTTtactcccttttttttttcctcctcttccCTCTATCCCCACACCCATCTCTCCGCCTGCGAGGATTTCAGCTGGACGGCCTCGGAGCT
>TU213519
tgtgtgtgtgtgtgtGCCACCCCCTAGTCCTACAAGCAATATTACATTTTCATACAAAATTAAATgggggagagaaaaacaaaacaaacaaacaaaaacagcagagctgctggagtttttaaaccttGTGTTCAATGTTGTAGACTTAATGTCCTTAATCTGTTGCCGCACAGTTTGTGTGGTTTATCCTCTAGTCTTTAATCAGTGGTTAAATTGTGCAACAGTTGTACCATGACCTTCCAGCCACCCCCAGTCCCACAAGCAAATCTCACATTTTTATacaacattaaaaattaaaaaaacacaacaaaacacaaacaacaagaaaaacaaagacagaTTGCACAGTGACACGATGATGACATCAAAGAAAACCATCCCACGGGGTCTGCTCCGCCACTCTGGTCCAGAACAGAGTCAGCCCAGAATCCCCAGAAGGGCCCCCTCCCACCTCCGGGAGTCCCCCAGGGCTCAGTCTTAAGGCCACTGCACGTACACGTTGGCGAGAGAAGAGGGGCTTcaaagtatccatccatccatctgtctgtccgtccatcCAGTTCTCGTTtactcccttttttttttcctcctcttccCTCTATCCCCACACCCATCTCTCCGCCTGCGAGGATTTCAGCTGGACGGCCTCGGAGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU213517 True 1890 lncRNA 0.41 3 10533016 10534978
TU213519 False 655 lncRNA 0.46 2 10506917 10534978

Neighbor

gene id symbol gene type direction distance location
lrrc4 lrrc4.2,LOC103033525,LOC108442864,LOC108263937,LOC107559378,LOC107594935,LOC107738417,LOC107672593,LOC107673147,LOC107723939 coding upstream 1207502 9294573 ~ 9299415 (+)
LOC111194762 NA coding upstream 1390841 9113979 ~ 9116076 (+)
LOC111194832 NA coding upstream 1392863 9110094 ~ 9114054 (+)
rbm28 NA coding upstream 1586939 8904735 ~ 8919978 (+)
LOC103031618 NA coding upstream 1603958 8897577 ~ 8902959 (+)
cmip cmip,LOC107684659,LOC106573687,LOC106560887 coding downstream 60424 10595402 ~ 10628479 (+)
tmem5 tmem5,LOC107722461,LOC107738400,LOC107587049,LOC107559810 coding downstream 223262 10758240 ~ 10764110 (+)
srgap1 srgap1,srgap1a,LOC107670373,LOC108264626,LOC107684655 coding downstream 231037 10766015 ~ 10901559 (+)
LOC103045650 NA coding downstream 367975 10902953 ~ 10912967 (+)
LOC103040136 NA coding downstream 382474 10917452 ~ 10924422 (+)
G157437 NA non-coding upstream 285948 10220666 ~ 10220969 (+)
G157388 sema3a,sema3ab,LOC108264812 non-coding upstream 452942 10048811 ~ 10053975 (+)
G157387 NA non-coding upstream 479011 10027519 ~ 10027906 (+)
G157334 NA non-coding upstream 916345 9585206 ~ 9590572 (+)
G157312 NA non-coding upstream 999784 9504074 ~ 9507133 (+)
G157513 NA non-coding downstream 124815 10659793 ~ 10660427 (+)
G157523 NA non-coding downstream 165179 10700157 ~ 10700372 (+)
G157540 LOC103039511,LOC100702099,LOC100707594,LOC105905159,LOC108412826,LOC105889141,LOC102291458 non-coding downstream 220101 10755079 ~ 10756662 (+)
G157546 NA non-coding downstream 346752 10881730 ~ 10882468 (+)
G157557 NA non-coding downstream 483437 11018415 ~ 11018813 (+)
G157383 NA other upstream 565112 9940829 ~ 9941805 (+)
G157055 NA other upstream 1936040 8569930 ~ 8570877 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other upstream 2900249 7600567 ~ 7606668 (+)
LOC111194759 NA other upstream 3075349 7372376 ~ 7431568 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other upstream 3335292 7093507 ~ 7171625 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other downstream 37765 10572743 ~ 10591523 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other downstream 165810 10700788 ~ 10713982 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other downstream 216721 10751699 ~ 10754698 (+)
hipk2 hipk2,LOC107722467 other downstream 496087 11031065 ~ 11143471 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other downstream 1805028 12340006 ~ 12366770 (+)

Expression


Co-expression Network