G157523


Basic Information

Item Value
gene id G157523
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 10700157 ~ 10700372 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU213566
CTTCAAAGgtttgttcacacacacacacatctcttaacaaacatggctctTCAATGGCATAATTCAAACAATCCCacataaaacatttgttttattaagagcatgttatttttgcctttttgaggattttttttgtaaccaAAACCAGCTATAATTATAGGTGCTACAACAGATTATATTTTGTAAAACAGCTGAGTGTaaagaaatgaaattaaa

Function

GO: NA

KEGG:

id description
ko00520 Amino sugar and nucleotide sugar metabolism
ko04966 Collecting duct acid secretion

RNA

RNA id representative length rna type GC content exon number start site end site
TU213566 True 216 lncRNA 0.30 1 10700157 10700372

Neighbor

gene id symbol gene type direction distance location
cmip cmip,LOC107684659,LOC106573687,LOC106560887 coding upstream 71678 10595402 ~ 10628479 (+)
LOC103035018 grm3,LOC108444204,LOC108263977,LOC107671160,LOC107665551,LOC107559415 coding upstream 170665 10465789 ~ 10529492 (+)
lrrc4 lrrc4.2,LOC103033525,LOC108442864,LOC108263937,LOC107559378,LOC107594935,LOC107738417,LOC107672593,LOC107673147,LOC107723939 coding upstream 1400742 9294573 ~ 9299415 (+)
LOC111194762 NA coding upstream 1584081 9113979 ~ 9116076 (+)
LOC111194832 NA coding upstream 1586103 9110094 ~ 9114054 (+)
tmem5 tmem5,LOC107722461,LOC107738400,LOC107587049,LOC107559810 coding downstream 57868 10758240 ~ 10764110 (+)
srgap1 srgap1,srgap1a,LOC107670373,LOC108264626,LOC107684655 coding downstream 65643 10766015 ~ 10901559 (+)
LOC103045650 NA coding downstream 202581 10902953 ~ 10912967 (+)
LOC103040136 NA coding downstream 217080 10917452 ~ 10924422 (+)
LOC103046273 NA coding downstream 445790 11146162 ~ 11206745 (+)
G157513 NA non-coding upstream 39730 10659793 ~ 10660427 (+)
G157483 NA non-coding upstream 165179 10506917 ~ 10534978 (+)
G157437 NA non-coding upstream 479188 10220666 ~ 10220969 (+)
G157388 sema3a,sema3ab,LOC108264812 non-coding upstream 646182 10048811 ~ 10053975 (+)
G157387 NA non-coding upstream 672251 10027519 ~ 10027906 (+)
G157540 LOC103039511,LOC100702099,LOC100707594,LOC105905159,LOC108412826,LOC105889141,LOC102291458 non-coding downstream 54707 10755079 ~ 10756662 (+)
G157546 NA non-coding downstream 181358 10881730 ~ 10882468 (+)
G157557 NA non-coding downstream 318043 11018415 ~ 11018813 (+)
G157703 NA non-coding downstream 609643 11310015 ~ 11314603 (+)
G157761 NA non-coding downstream 767554 11467926 ~ 11468139 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other upstream 108634 10572743 ~ 10591523 (+)
G157383 NA other upstream 758352 9940829 ~ 9941805 (+)
G157055 NA other upstream 2129280 8569930 ~ 8570877 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other upstream 3093489 7600567 ~ 7606668 (+)
LOC111194759 NA other upstream 3268589 7372376 ~ 7431568 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other downstream 416 10700788 ~ 10713982 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other downstream 51327 10751699 ~ 10754698 (+)
hipk2 hipk2,LOC107722467 other downstream 330693 11031065 ~ 11143471 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other downstream 1639634 12340006 ~ 12366770 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other downstream 2035147 12735519 ~ 12741002 (+)

Expression


Co-expression Network