G157557


Basic Information

Item Value
gene id G157557
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 11018415 ~ 11018813 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU213612
gcctaagtgtgaaaacacaaacagcaatttactgggctggcttgcgcagcggagaaaccataagccgcggtgtggggcagcagaaattccgggatgaaaacacaaagaaatctgggctaaaaacacagaaaaaatatggggtgaaaacacaaaaatccgggataaaaacaccaaaaatccggggtgaatatgtctcgtcggtcagagcaaattgaacatttttcagtggattaaaggggccgtgatttgcttttttttattatttttttttacctctttttttaaaaacgaatattcgaatattcgcttcgaatcagtgccgaatatccggagctcaaaaaacgctattcgggccagccctagaaA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU213612 True 366 lncRNA 0.41 2 11018415 11018813

Neighbor

gene id symbol gene type direction distance location
LOC103040136 NA coding upstream 93993 10917452 ~ 10924422 (+)
LOC103045650 NA coding upstream 105448 10902953 ~ 10912967 (+)
srgap1 srgap1,srgap1a,LOC107670373,LOC108264626,LOC107684655 coding upstream 116856 10766015 ~ 10901559 (+)
tmem5 tmem5,LOC107722461,LOC107738400,LOC107587049,LOC107559810 coding upstream 254305 10758240 ~ 10764110 (+)
cmip cmip,LOC107684659,LOC106573687,LOC106560887 coding upstream 389936 10595402 ~ 10628479 (+)
LOC103046273 NA coding downstream 127349 11146162 ~ 11206745 (+)
fam107b fam107b,LOC107722469,LOC107738407,LOC102787157 coding downstream 213148 11231961 ~ 11266320 (+)
nup205 nup205,LOC107684652 coding downstream 250202 11269015 ~ 11293673 (+)
LOC103046882 zgc:110789,LOC108413851,LOC107673135,LOC107738439,LOC107722464,LOC107670368,LOC108264853,LOC107587050 coding downstream 432109 11450922 ~ 11461645 (+)
LOC103032257 tspan9a,LOC108414266,LOC105018129,LOC107672591,LOC107738414,LOC107587031,LOC107559293,LOC106573177 coding downstream 1012323 12031136 ~ 12333915 (+)
G157546 NA non-coding upstream 135947 10881730 ~ 10882468 (+)
G157540 LOC103039511,LOC100702099,LOC100707594,LOC105905159,LOC108412826,LOC105889141,LOC102291458 non-coding upstream 261753 10755079 ~ 10756662 (+)
G157523 NA non-coding upstream 318043 10700157 ~ 10700372 (+)
G157513 NA non-coding upstream 357988 10659793 ~ 10660427 (+)
G157483 NA non-coding upstream 483437 10506917 ~ 10534978 (+)
G157703 NA non-coding downstream 291202 11310015 ~ 11314603 (+)
G157761 NA non-coding downstream 449113 11467926 ~ 11468139 (+)
G157764 NA non-coding downstream 469247 11488060 ~ 11489560 (+)
G157766 NA non-coding downstream 473426 11492239 ~ 11492486 (+)
LOC111194766 NA non-coding downstream 474802 11493615 ~ 11501536 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other upstream 263717 10751699 ~ 10754698 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other upstream 304433 10700788 ~ 10713982 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other upstream 426892 10572743 ~ 10591523 (+)
G157383 NA other upstream 1076610 9940829 ~ 9941805 (+)
G157055 NA other upstream 2447538 8569930 ~ 8570877 (+)
hipk2 hipk2,LOC107722467 other downstream 12252 11031065 ~ 11143471 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other downstream 1321193 12340006 ~ 12366770 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other downstream 1716706 12735519 ~ 12741002 (+)
LOC107197649 LOC108416831 other downstream 2715132 13733945 ~ 13742500 (+)
LOC103042073 LOC103042073,LOC108418727 other downstream 2955008 13973821 ~ 13980025 (+)

Expression


Co-expression Network