G157782


Basic Information

Item Value
gene id G157782
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 11591964 ~ 11592991 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU213897
TGACATCAGGAAAAGTCCAATCTGGCACATAGTTTGTTCGAATATTACAAAAAGGGAAGAAAGAAAGTCTACAAATCGATAATTTATACAAATACAACACcgtttcaaaaaataaaactttcttAATTTAGTAAACTCTCTGTGCTCGTACTGAGCACGGTTCTGCAGTGACCCCACCGCCTGAAATCCCTGAGGAAAGACAAAAACACGCAATGTCTAACGGTGCTTGTTTCGTGTCGTTCTGCGTGGGTGAGGagacacactaacacaaaaAGGTGAGGAGAGGAGGGTGAACACATGGTGAGCACagcacagctacacacagcacaGTCTGCACACAGTCACATACCCACCCACCCAGGTTTACACAACAGCAGAGTGAGCACTGTGATTAACTCTGTGAAGAGAGATGAGCCACAGCTCAGCAGAACTACAGGAAAAACCACTGAGCTTACTGAGAAGGTATGGAGCTCCTGAAGGGACATGGTGTATTTAACTTTCAGGAAAAATTCTGGTGCACGTCTGATGTGCACTATGCGGTAATCACCAgatatactaagtggtgagcagaAAAatccaatgtgtttttttcattcgTTTAGTATCTGGTGATTAAAAAATGACACTACGTCCCTTTATCTACAGATTAAACAAAATACACACTGTTCCTTCAAGGGGCTCCATAGGAAGGAGCTAGAATGGTGCAGTATGCATAACTGATGAGCTCAGGTCAGTGATAATGTAGGCATTTAAATGCAATGGTAATCCCAGATAAACTACTGGTAAGCAGAAAAGACCACAATCTGAATCTGAAACTGCTAAACTCATTCAAATCAGGGAGGCTGTTTAAACGCACTATAAAATCCTATTACTGCAGAACATTAGAGTGTGTCAGCaatccaaataaaacatttatgtaCATGAATTTATGAATTCGGAAATGAATTACATAATGGGAAgacaacttttttaaaaagtttataagGGTAAGGGTTTGATTGCATACAGCCAATAAATTAACAGAATGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU213897 True 1028 lncRNA 0.40 1 11591964 11592991

Neighbor

gene id symbol gene type direction distance location
LOC103046882 zgc:110789,LOC108413851,LOC107673135,LOC107738439,LOC107722464,LOC107670368,LOC108264853,LOC107587050 coding upstream 130319 11450922 ~ 11461645 (+)
nup205 nup205,LOC107684652 coding upstream 298291 11269015 ~ 11293673 (+)
fam107b fam107b,LOC107722469,LOC107738407,LOC102787157 coding upstream 325644 11231961 ~ 11266320 (+)
LOC103046273 NA coding upstream 385219 11146162 ~ 11206745 (+)
LOC103040136 NA coding upstream 667542 10917452 ~ 10924422 (+)
LOC103032257 tspan9a,LOC108414266,LOC105018129,LOC107672591,LOC107738414,LOC107587031,LOC107559293,LOC106573177 coding downstream 438145 12031136 ~ 12333915 (+)
utp4 utp4 coding downstream 922471 12515462 ~ 12524112 (+)
mlycd mlycd,LOC107583902,LOC107722462 coding downstream 1190808 12783799 ~ 12800375 (+)
vps9d1 vps9d1 coding downstream 2025697 13618688 ~ 13647775 (+)
spata2l NA coding downstream 2066939 13659930 ~ 13664333 (+)
G157773 dnah3 non-coding upstream 75855 11515860 ~ 11516109 (+)
G157771 NA non-coding upstream 79443 11511443 ~ 11512521 (+)
LOC111194766 NA non-coding upstream 90428 11493615 ~ 11501536 (+)
G157766 NA non-coding upstream 99478 11492239 ~ 11492486 (+)
G157764 NA non-coding upstream 102404 11488060 ~ 11489560 (+)
G157781 NA non-coding downstream 1042 11594033 ~ 11597529 (+)
G157798 NA non-coding downstream 720725 12313716 ~ 12318215 (+)
G157795 NA non-coding downstream 732876 12325867 ~ 12433296 (+)
G157807 NA non-coding downstream 782431 12375422 ~ 12377970 (+)
G157809 NA non-coding downstream 786502 12379493 ~ 12384689 (+)
hipk2 hipk2,LOC107722467 other upstream 448493 11031065 ~ 11143471 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other upstream 837266 10751699 ~ 10754698 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other upstream 877982 10700788 ~ 10713982 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other upstream 1000441 10572743 ~ 10591523 (+)
G157383 NA other upstream 1650159 9940829 ~ 9941805 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other downstream 747015 12340006 ~ 12366770 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other downstream 1142528 12735519 ~ 12741002 (+)
LOC107197649 LOC108416831 other downstream 2140954 13733945 ~ 13742500 (+)
LOC103042073 LOC103042073,LOC108418727 other downstream 2380830 13973821 ~ 13980025 (+)
G158369 NA other downstream 3457231 15050222 ~ 15050718 (+)

Expression


Co-expression Network