G157905


Basic Information

Item Value
gene id G157905
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 12655809 ~ 12661108 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU214073
aggataatgagcatccacacacatacagacaagtACAGCATTTCATTTATTGTATACATTCTTTTCTTTAAAAGTACTAAAACGAAAAATAATTCATTGGCTTATAGTAACATTTCACTCACAAATGATCACAGTGAACATAATGCCAACACCAGTCTTCACTTCAACAACGGCATGCATAGAAATAAACACCTTCATGATGTCTGGAGTGCTTTTTGAGGCTTCAGTGTATATCCACAGTCAGAAGACAGATAATGTGTGGACTATTAAGGCAGCATTAAACGGCCATTAAGCACATGATAGACTGTTACCATTGTCATCAGCAACACTTCTACAATACACCGTCATCATACTGTGAAGCTACGCCAAGACGTTCATCAGTCATGCAAAACTAACTGGCTCTAATCGCAGCAGGCACATTAACTGGCGTTTGTGTTTGTGGGACATTACGTGACGGGTAGAGGGAACGTCTTTGGTTTTAAAAGCTTTCGGAAACCATTCTCTGTGATTTATAGTTATATAAGGATATGGATGTTGTATAAGAGTGTAGGACAGGCAAATGGAGAGCTTTTTGGAAGTAACTGGGTAAATGGATGGACACGAGGTTAGGTAATCGggaaaacaatgaacacctcCGAAAATAGCCCCATTTCCACATCCATCTCATTTCGCTGAGCAGCAGCCCATCACACAGAGTATTCTCTGCTAATAACGAGTGGACAGCTGGTCCTAAGCTCTGCTGTGTCTACACTTTACTTAGTTACTGATGAAACAAACAGAGGGAGAGGATTAACTCCAGAactgcaaatacacacacatacagttatGTGAAAAAACATAGGTCAACCCATGAAAAACTTTGTCtttttcaacatttaaaaataattacgtgccctagattttttttatgaaatacataaaaatggGTGTTAGttgaagtgtttaaaaatgtttaatcgTTAAAATGCCCTCAGCAGACTCATCTGAGATCTGCAACATGGCAACTAAGTTTGGTGTGTGTCTTCACTGTGTACCTATACCTCGCTCCATCTCCAACcttgttacatcacagtctacactgtgaagagctccctctgttgctgcatgtGAGTAACACAGTTTAAGTATGTTGTACTTCAATGTTTTATCACAGTTCTTTCGAggtgtttttaatgaaatgcaCATTGTGATAAAGAAGAAACTCCACCAGCCTATACCTAGATAATTAATCCCAGCAAACATACATGTTGCATTGTGACACAATTTTGACAATCTAATGTTACAGTGTTCACAACACTGACACAACATTGAAATGCATTCGAAATGCATATGCAATTAAAAACGATTTTGGGGTAAAGGTGGCATAAGTCAAGCTTTGGCTCGCAAGGTTGCTCAGACTCGAAGAGTGGGTGGATCCATCCAACTGGTTGCCTTGTTATTGGTTAGGATCAGGCTGACAATAGCCTGACTACTTTTggaactatactatactattgaAATAcagtcttttatttacatttaatatactTCTGGAAGATATTTATAAGACATAAggtaatttttacatttacactgtggGCCATAAAACCTAAAAACCAGACTAACCTAATTAGTAGTGGTATTTagaacatgattaaaaagttgCTGGAGGAGCCTGTCTTATTTAAACCTCAGGCAATTAGTTTGGTTTGCTTTTAATTGCTTTGATGCCACCGATAACACCAACATCCAAAGAGCTCTCTGATGCCTGCATATGGTTTTCATGGggtgtcctattttttttttcacacagattCAACATATTCGAAATGAATAGCAAAAAAGCTGGAGACTCGCACTGAAGTGTCAATATGTGTCTAACACCCAAACTCTTCCTCTGTATCAGCTATAAAAAAAGCAATCAAGTTGCATTTGCAGAAAAACACTGAGGCCAGCATTCTACTTCTGTTCTCTAAAAATGAAAGGACACAGTGAAAAACGGGAATGAGGAACAGCGAGAAGCTAGAGGGCCTTTAATGCCTCAGATGTGTCCCTGCAGCAGGAAGGCACTAGGACAGAATTCGGCCTGAGAGTGGCCTGTTCTGGCCAATGATCAATAGCGTCCCACTCCCAGCACCAGTGTGTTCTGAAGCTTAATGGGGTGGAACGTTTTCCTGATGGAAGAATCATTGTGGCTTTTCAACTTCCCCTCCAACATTTTCCAGGCTGATCATTAATCGGTGGTCTTACTGTTGCTCACATCGATGGGCTCAAAAAAACATCCTCAGCCCAGCAACAGTAACGGATTGCTCCACATTACTGAGTTCCAGTCTGAGGATCAATAATGAACATATTACCCATCTACACATAAAGCTGAACAGGAAATATGTGTGGTCTGAGAGAAGACTGTGTTTATGTTGTTATTACTCTTAAATGACATTAACCACAGGGTCAAGCAGCATGCGGCTAGAACTCTTAGACATATTTCTGGAGGTAATGAGCCGGAACATGTTCATGATTGGGCTTGTGTGGGCACTGagatgtgattttttctttttttcaatatagAGCAGAGTCATATATAAGTTCTCAACTTAAAGGGGCCATATACTTTGGTCCTTTAAGGGTCCTTTAGGAAAGGAAATGGTGTTGGGTATAAAATGACTTCGCAAAGATCCATTTGAATGCTGCATTAAAGGAGCAGTCCTTAAGATTGCTTCTTGATTTATTAAAAGCagtactattttttattatccattGATGTTTTAATGTGACTAGACCATAAATAAAGGCTTTGATTCCAAAGATCCattttaatgctgctttaaagcaACAATCCTTAAgactattattttattgaaagcagtaatattcctttttttttatactttttttatatttacatgtgACTATACCATTGATACCAAtgataattaatcattaataccaaatgatatttttactgcactgatcagccataacatcaAAACTACTTGTCTAACATTGAGTATTAGTGTTGCCACAACAGATCTGACCTTTTGAAgcatggactccacaagacctctgaaggtgtttTGTGGTATCTGGCACATCTGGTATCAGGTCAAAACTCAAGCAGCTGATCCTTTAAGTCCTGTAAATTGTGAGGTCAGCTTTAAGGGCCATCGATATGGTGgttcaatacatcagctcagcaAGTTGTCACTGTTGGGCTCTTGATTAAGGCATTAATCTTTGCTGTTCTGCGCATCTGCTTACTgtatgtccatgtgtgtgttttctgagtGTGTGAACtcactggtgtgtatgtgtgttttcacTAAACTGATGGGTTACAAGTGCAGGCCAAATTCCAAATTCTGTGCTTCCAGCACAAGTATGATCAATAGGATTGTCTCATCTTGTCTGGAGTTAAATGCCCATGATCGTGAGGCAGATTCACTGGTTGCCCTTTTTTGGAGCACTTTTGGCAGTTATTGACCACTGCATACCACGGAAACATCACAAAACCAAGACAAAAGATGCTTttgagatgttctgacccagtaATCTAACCAAAAGAACATGCCAGCCTATTTTATTCCTCCTTTTAACACATCAACTTTAGTAACTGAGTgatcacttgctgcctaatatgtaAAATGCCATTCTTTGACAGATGCCACTGTAGATTAGAGCATGAATTACGGAGTGATTTGAGAGCTCTGACTCCCCTAATTAAGACTTGAACCAACccaaaaaggtaaaaacaatagtttgGGCATCAAAACATTAACATAATCTTCTTATCTATTAtgctaaatattacaatacatttacagCCTCCATGCCTGAAAGAGTTTTGTAATACGATTCCCCACACTGCTAATAGTAAAGTGAATCATACTATTCCTTATAATTGAACATTCCTCTCATCTGCATGCCTCACTCATTATTGGTCACGTGACTTGTGTCCTAATTAAGGTAGCACCTGCACAAGCCACTGCACTGTGTAAGTAGCTGCTATCTAGCTTTCTTAATGCACTTTATTGCCTTCAGTACATCGATCACATGAAGTTGTTAGACTGTgagtagattattattataaatatactgtattatttcaCCTATGTGGCTTCAGGATGAAGATGTccgagatttttttttctttttgaacttttaaggtggaacagatcATTGATGTATTTATGCAATATTTGTACAGTGACATAACAGCCATACACTGTAACCACATTTAGTGAAGAGTATTAGTTTAAATACAGCACATtactaaaatacaaatacaggtCAGCAGACAGGAGGAGGTCTGGACTGGTTTTACTTTTACACCCTGAGGAAGTTAACACTGTCAGaggtgctaatgttatggctgatctgtgTAGTTGCACTAAGTAGGACTTTGTATGTGACAAAAActaatttgatcagatttttttcttcaaataaaggAATCGGAAAAGCCTCATATCTAAAAGACTAACATCAAACTGCCGTTTAAAGcctgttttattagtttcacCTCGACAGGTGCAGTATCATAAATACTCTCAAGATGGAGAGCAAATGGGAGGGTTTTGGCCCTGGAACCCTCCAAAGTGTGGATAAACTGGTCATTGCAGGCAGTCTGTGGCAGATGAATTTGGCACAGTTTTCTCTCCGGAGCCTCCTGCCAGCTCCAATTGCACTGAAAACGTTCTGGGCTATTCTCACGGCTTGCCAAGAGCCgagttatttttaaaatcagaatATGAAAGTGTCATTTATCAAAGCATAGGGCAAATGGGTGTAATGAATAAATGAGACACCCTGTTTGTGGCTTTGAGAACATATATCATCTTAAAAACGCAGCGAGTGAAATGAGCAAAGTACGATCGCAAATGATTCATGTAACAGCACCAGGTACAGCACTCGCTAAAGCCCTCTTTCTTTTGAACAGTGCCGTCAGTCATCAGTAACTGCGGCTAAAATTGAcctatttatattaaaatatctttaaaaaaataaaacacaacagttAAACACATGTCCACCTCGTAAGATCATTAAAAGCATGCATTCACATAACAAAGGAGCCCTTGATTTGGAGTTAGGTTTGTGACGACTGTCCGAAAAACGCTCATCCCAGTTTGACTCTGGAGTCCTGGCCGTAGTAGCCCACCTGCAGCAGAATGAAGACGTCGATCAAGATCTGGATGGCACCGCACAACCAGAACTGCATGGGGCTCTCGTTGATCACGAAGTACGTGGTCTTGAAGATGTCGCCAGCAGTCCACAGGAGCACCATCTTT

Function

NR:

description
PREDICTED: serine/threonine-protein kinase WNK1-like, partial

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:0009056 catabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0017144 drug metabolic process biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU214073 True 5267 lncRNA 0.39 2 12655809 12661108

Neighbor

gene id symbol gene type direction distance location
utp4 utp4 coding upstream 131697 12515462 ~ 12524112 (+)
LOC103032257 tspan9a,LOC108414266,LOC105018129,LOC107672591,LOC107738414,LOC107587031,LOC107559293,LOC106573177 coding upstream 321894 12031136 ~ 12333915 (+)
LOC103046882 zgc:110789,LOC108413851,LOC107673135,LOC107738439,LOC107722464,LOC107670368,LOC108264853,LOC107587050 coding upstream 1194164 11450922 ~ 11461645 (+)
nup205 nup205,LOC107684652 coding upstream 1362136 11269015 ~ 11293673 (+)
fam107b fam107b,LOC107722469,LOC107738407,LOC102787157 coding upstream 1389489 11231961 ~ 11266320 (+)
mlycd mlycd,LOC107583902,LOC107722462 coding downstream 122691 12783799 ~ 12800375 (+)
vps9d1 vps9d1 coding downstream 957580 13618688 ~ 13647775 (+)
spata2l NA coding downstream 998822 13659930 ~ 13664333 (+)
uri1 uri1 coding downstream 1005577 13666685 ~ 13675380 (+)
cry1 cry1,cry1ab,LOC107672239,LOC108426403,LOC103023024 coding downstream 1299947 13961055 ~ 13972324 (+)
G157903 NA non-coding upstream 5625 12647988 ~ 12650184 (+)
G157795 NA non-coding upstream 222513 12325867 ~ 12433296 (+)
LOC111194767 NA non-coding upstream 224089 12429768 ~ 12431720 (+)
G157809 NA non-coding upstream 271120 12379493 ~ 12384689 (+)
G157807 NA non-coding upstream 277839 12375422 ~ 12377970 (+)
G157920 zgc:173742,LOC108415671,LOC107684664,LOC107553995,LOC107749320,LOC108264272 non-coding downstream 80740 12741848 ~ 12758089 (+)
G157926 NA non-coding downstream 201281 12862389 ~ 12862656 (+)
G157933 cdh13,LOC107684661,LOC107722459 non-coding downstream 313380 12974488 ~ 12982471 (+)
G157943 NA non-coding downstream 614352 13275460 ~ 13345464 (+)
G158023 NA non-coding downstream 1187534 13848642 ~ 13849299 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other upstream 289039 12340006 ~ 12366770 (+)
hipk2 hipk2,LOC107722467 other upstream 1512338 11031065 ~ 11143471 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other upstream 1901111 10751699 ~ 10754698 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other upstream 1941827 10700788 ~ 10713982 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other upstream 2064286 10572743 ~ 10591523 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other downstream 74411 12735519 ~ 12741002 (+)
LOC107197649 LOC108416831 other downstream 1072837 13733945 ~ 13742500 (+)
LOC103042073 LOC103042073,LOC108418727 other downstream 1312713 13973821 ~ 13980025 (+)
G158369 NA other downstream 2389114 15050222 ~ 15050718 (+)
LOC111194769 NA other downstream 2467260 15128368 ~ 15137270 (+)

Expression


Co-expression Network