G157933 (cdh13,LOC107684661,LOC107722459)


Basic Information

Item Value
gene id G157933
gene name cdh13,LOC107684661,LOC107722459
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 12974488 ~ 12982471 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU214112
CTGGATCTGACGGAAGTCTGGGTCAGTGGCGTTGAGCATGGCCACGAAGCTTCCTACAGGAATATTCTCCCATTTAGTGACCATCAGGGGATCCGGGAAGAAGACCGGTCCCTCGTTGACGTCCTGAACTGCAATGTAGACGGTGGCTGTGGAGCTGGGGCCATAAATGACATCAGGCACCAGAGGGTCCTCATTCTCCACCCTTATCATCAGTGTGTGAAACATGCTGCTCTCATAATCCAGGGGCTTAACCACAGAGAGCATGCCCTCATTGTTGTCAGGATTGGTGTGGATCTCAAAGCTCTGGTTGGGATCTCCTTTGATGATAGAGTACATAGCTCTAAACCCTCCAGTGGCAGGGTCATCTCTGTCATCCACGGTCAGATTTACCACCACGCCTGTAGAGCCTTCATCCACTGAGGCCTGGAActtttcttcattttccttCCTGTCTGGC

Function

symbol description
cdh13 Predicted to enable cadherin binding activity and calcium ion binding activity. Acts upstream of or within apoptotic process involved in blood vessel morphogenesis. Predicted to be located in plasma membrane. Predicted to be part of catenin complex. Human ortholog(s) of this gene implicated in breast cancer (multiple); lung non-small cell carcinoma; reproductive organ cancer (multiple); and urinary bladder cancer. Orthologous to human CDH13 (cadherin 13).

NR:

description
PREDICTED: cadherin-13

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214112 True 457 lncRNA 0.52 3 12974488 12982471

Neighbor

gene id symbol gene type direction distance location
mlycd mlycd,LOC107583902,LOC107722462 coding upstream 174113 12783799 ~ 12800375 (+)
utp4 utp4 coding upstream 450376 12515462 ~ 12524112 (+)
LOC103032257 tspan9a,LOC108414266,LOC105018129,LOC107672591,LOC107738414,LOC107587031,LOC107559293,LOC106573177 coding upstream 640573 12031136 ~ 12333915 (+)
LOC103046882 zgc:110789,LOC108413851,LOC107673135,LOC107738439,LOC107722464,LOC107670368,LOC108264853,LOC107587050 coding upstream 1512843 11450922 ~ 11461645 (+)
nup205 nup205,LOC107684652 coding upstream 1680815 11269015 ~ 11293673 (+)
vps9d1 vps9d1 coding downstream 636217 13618688 ~ 13647775 (+)
spata2l NA coding downstream 677459 13659930 ~ 13664333 (+)
uri1 uri1 coding downstream 684214 13666685 ~ 13675380 (+)
cry1 cry1,cry1ab,LOC107672239,LOC108426403,LOC103023024 coding downstream 978584 13961055 ~ 13972324 (+)
LOC103042895 LOC108425440,LOC107740436,LOC107583921,LOC107672215,LOC107749314,LOC107553958 coding downstream 1025544 14008015 ~ 14022424 (+)
G157926 NA non-coding upstream 111832 12862389 ~ 12862656 (+)
G157920 zgc:173742,LOC108415671,LOC107684664,LOC107553995,LOC107749320,LOC108264272 non-coding upstream 216399 12741848 ~ 12758089 (+)
G157905 NA non-coding upstream 313380 12655809 ~ 12661108 (+)
G157903 NA non-coding upstream 324304 12647988 ~ 12650184 (+)
LOC111194767 NA non-coding upstream 542768 12429768 ~ 12431720 (+)
G157943 NA non-coding downstream 292989 13275460 ~ 13345464 (+)
G158023 NA non-coding downstream 866171 13848642 ~ 13849299 (+)
G158045 mterf2 non-coding downstream 1001475 13983946 ~ 13987158 (+)
G158038 ric8b non-coding downstream 1105995 14088466 ~ 14092532 (+)
G158068 NA non-coding downstream 1133848 14116319 ~ 14116843 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other upstream 233486 12735519 ~ 12741002 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other upstream 607718 12340006 ~ 12366770 (+)
hipk2 hipk2,LOC107722467 other upstream 1831017 11031065 ~ 11143471 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other upstream 2219790 10751699 ~ 10754698 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other upstream 2260506 10700788 ~ 10713982 (+)
LOC107197649 LOC108416831 other downstream 751474 13733945 ~ 13742500 (+)
LOC103042073 LOC103042073,LOC108418727 other downstream 991350 13973821 ~ 13980025 (+)
G158369 NA other downstream 2067751 15050222 ~ 15050718 (+)
LOC111194769 NA other downstream 2145897 15128368 ~ 15137270 (+)
c18h11orf16 NA other downstream 2323741 15306212 ~ 15315552 (+)

Expression


Co-expression Network