G157943


Basic Information

Item Value
gene id G157943
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 13275460 ~ 13345464 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU214123
AAATTATAAGCATTAGCAGGTTATTACAAACTGAAATCAAACAGTTTTCTATTCAAAACTTTTTTCTAGGTGATGTTACATTTGCACATAGGACCCCTTGTTCGAAAGGATCTTCTGAATTTTCTCGTTCATTGAATTTGTCAAGTTTTGGATGGTATCTGCTTCAATTGTCGTGCATGAGGACAGAATACCCTCCCAGAGCTGTTGCTTACATGTGAACTGCCTCCCACCCTCATAGACACTCCTTTTGATGATGCTTCAGAGGTTCTCAATGGGGTTGTGGTCAGGGGAGCATGGGGGCCACACCATAAGTTTGTCCCTTTTTATGCCTATAGCAGCCAGAGATGCAGATGTGTTCTTTGCAGCATGAGACGGTGCATTATCATGCATGAAAATGATCTTGCTGTGGAATGCGCGGTTCTTCTTCTTGAACCATGGCAGGAAGTGCTGTTTGAGAAACTCCACATACATTATGGAGGTCATCTTTACCCCTTCAGGGATCCTAAAGGGGCCGACAATCTCTCTCCTCATGATCCCAGCCCAAAACATTACTCCACCTCCTCCGTAGCCTTGTTTGCATGGGGTGTCCATCAACCAGCCATCCACCACTCCATCCATCAGGACCGTCGATTGTTGCACGGCACTCATTGGTGAACAAAACAGTTTTGAAGTCAGTCTTCATGTATTGTTTGGCCCACTGGAGCCATTTCTGCTTGTGTGCAGTGAATAGAGGAGGTCGACAGGATGGCTTATGCACAGCTGCAAACctctgaacgac
>TU214124
TATTAGAACACAGCCGACACTTTCCTATTTTGGCTTAAAATGTAGGCTGCTTAATAATGTGGGACAGCCTTCTTAAGTAGCTTGCCTTTAATTGGACACGCCTGCCAAACTTATTAGAACAGGTGTCTGCAATTGCTTTCAGTGATATAAAGAGCCCTGACACACATCACCATCAATGAGTTTaactgacaaacaaaaaaaatattaccttATCACTCCTAAACActttttgcataataatttggaacacagtgtatata

Function

GO: NA

KEGG:

id description
ko04340 Hedgehog signaling pathway
ko05217 Basal cell carcinoma

RNA

RNA id representative length rna type GC content exon number start site end site
TU214123 True 778 lncRNA 0.46 2 13299376 13345464
TU214124 False 260 lncRNA 0.36 2 13275460 13300656

Neighbor

gene id symbol gene type direction distance location
mlycd mlycd,LOC107583902,LOC107722462 coding upstream 475085 12783799 ~ 12800375 (+)
utp4 utp4 coding upstream 751348 12515462 ~ 12524112 (+)
LOC103032257 tspan9a,LOC108414266,LOC105018129,LOC107672591,LOC107738414,LOC107587031,LOC107559293,LOC106573177 coding upstream 941545 12031136 ~ 12333915 (+)
LOC103046882 zgc:110789,LOC108413851,LOC107673135,LOC107738439,LOC107722464,LOC107670368,LOC108264853,LOC107587050 coding upstream 1813815 11450922 ~ 11461645 (+)
nup205 nup205,LOC107684652 coding upstream 1981787 11269015 ~ 11293673 (+)
vps9d1 vps9d1 coding downstream 273224 13618688 ~ 13647775 (+)
spata2l NA coding downstream 314466 13659930 ~ 13664333 (+)
uri1 uri1 coding downstream 321221 13666685 ~ 13675380 (+)
cry1 cry1,cry1ab,LOC107672239,LOC108426403,LOC103023024 coding downstream 615591 13961055 ~ 13972324 (+)
LOC103042895 LOC108425440,LOC107740436,LOC107583921,LOC107672215,LOC107749314,LOC107553958 coding downstream 662551 14008015 ~ 14022424 (+)
G157933 cdh13,LOC107684661,LOC107722459 non-coding upstream 292989 12974488 ~ 12982471 (+)
G157926 NA non-coding upstream 412804 12862389 ~ 12862656 (+)
G157920 zgc:173742,LOC108415671,LOC107684664,LOC107553995,LOC107749320,LOC108264272 non-coding upstream 517371 12741848 ~ 12758089 (+)
G157905 NA non-coding upstream 614352 12655809 ~ 12661108 (+)
G157903 NA non-coding upstream 625276 12647988 ~ 12650184 (+)
G158023 NA non-coding downstream 503178 13848642 ~ 13849299 (+)
G158045 mterf2 non-coding downstream 638482 13983946 ~ 13987158 (+)
G158038 ric8b non-coding downstream 743002 14088466 ~ 14092532 (+)
G158068 NA non-coding downstream 770855 14116319 ~ 14116843 (+)
G158085 NA non-coding downstream 804022 14149486 ~ 14150489 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other upstream 534458 12735519 ~ 12741002 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other upstream 908690 12340006 ~ 12366770 (+)
hipk2 hipk2,LOC107722467 other upstream 2131989 11031065 ~ 11143471 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other upstream 2520762 10751699 ~ 10754698 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other upstream 2561478 10700788 ~ 10713982 (+)
LOC107197649 LOC108416831 other downstream 388481 13733945 ~ 13742500 (+)
LOC103042073 LOC103042073,LOC108418727 other downstream 628357 13973821 ~ 13980025 (+)
G158369 NA other downstream 1704758 15050222 ~ 15050718 (+)
LOC111194769 NA other downstream 1782904 15128368 ~ 15137270 (+)
c18h11orf16 NA other downstream 1960748 15306212 ~ 15315552 (+)

Expression


Co-expression Network