LOC107197649 (LOC108416831)


Basic Information

Item Value
gene id LOC107197649
gene name LOC108416831
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 13733945 ~ 13742500 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU214177
TGTGCTacactttgtgtttatttggcaGTTTGCAGTATTTACAGTACTTTGTTCATGTGGTCCGTCTGAGTGTGAGTAGGCTACTGTGGTGCCACTTGCATTCAACACATTAGCTTTTTAATCAACAACAAAACACTTTGGCTTTTTACAAAGCGATTACCTGGGGAGATGAGAAATTAGTCAAACTCGCTCTTTACATCAGTTACAGATAAGTAACATTTGATTAACATAGTAATTACAAATCAAAACTCCAAAAAGGAACAACCAACAACTAGAATGTTAATAGTACACACTTTAAAACGTACTCTTGTCCGTTGAGTTGTACGAAGTTTGTTAAAATGTGCCTTTCCAATAGATGTCTTTAGCATCCATACAACAATAATAGTCCATACAGGAACTGTGTCCATATACACTCGTCACGTCACATTGACACTGGTATGACTAGTTTGCTAGTCACCAATTTatgaacactgactttaacaatccttttttttgtttgtttgtttgtttaacaatttaatCAATTTTCACATACATACAATTGTTCCTCTTTTTGCAGAGTCTATATGCATCAGGTTGGCAATAAAGAGTGAAGCTATCGCAGGATCCTGGGCGCCGACCTGTCATTGCTCACGGTTTTCCTGAGGCGCACTCCTCTGCGGATGGACTTCAGCATGTCCTCTCCCTTTTCTGTGGGCGGAGGGTCCTCCTGGTGGCCGTGGCTAGCCTGGGGATCCGTGGGGAACGGGTATTGACCTTCTCCCAGGGCATGAGCGTTGGCCACAAGCTCTCCAATTTTCTCCACCAGGCTGTGGCGGTTAGCAGCCAGAATCTGCTCCTCTGTGCTGAGGGCCATAGCTCCGGACTGCTGGGAGTACACGCTCATGCTCGAGCCCCAAGCAGAGTTAGGCAGACTCATCCGTTTGGGAGAGGCTTTGTACTCCAGGATCTCCAACGAATCTTCACTGTACAGGCTCTCCTCACTGCCATTGTGCTCTGGTGGAGGACTGGGGAAACCAGGGGAGTCTGGGACAGTAGGGGTCTTCACTGGAACAATGGGAGGCCGGATAGGAATCGGGCCCACGTTGGATGGGACACGTCTCACACCAGTTTTGGAGGACGGGGTCCTGCGGATGGTGGCCGTTCCAGAAGAAATTACTGTTCCTCCTGATGTTCCTTTGCCATTGGAAGCAGAGGAACCCTGGGCGCCTACACCTCCAGGAAGCCCCGCAGTGCTCGCAGGCCTCTTGGTCTGGATCATGCGACGGTAGTTCTGGGCCAGGTTGCTGTGCCGAGGGACGGTGGAGGATTTATCAAAGTCCGTCTGAGCATCACTTTCGCCGTCTCCGTTCATAGAGTAGCAGTCATAGTCAGAACCTGCAGAAAGAAATCAAGGTTTTACAGAGCAGCAGTGTCGCCCCCTCCTTGCTAGTGAACCGAGGGTCCTTCGATCACCTATGAGAGCTGGCAGACTGCAGGTCTCCTAAGGACAGTTATCAGGTAAGCTTATTTATgttacaattaattattaatacacAATGTGATGGTCAGGCCTACTGACATcaaatagaccaacacaaagtatcaCATACctgtggaatgaaaatgatacatggttttacaCGCTTTAATCAAATAtccaaatctgaaaaatgtgacATGCAGCCCACTATATATGAATACTTAG
>XR_001518691.2
ATTTATCAAAGTCCGTCTGAGCATCACTTTCGCCGTCTCCGTTCATAGAGTAGCAGTCATAGTCAGAACCTGCAGAAAGAAATCAAGGTTTTACAGAGCAGCAGTGTCGCCCCCTCCTTGCTAGTGAACCGAGGGTCCTTCGATCACCTATGAGAGCTGGCAGACTGCAGGTCTCCTAAGGACAGTTATCAGGACCACCAGCGCTGtgatgctggagtttttaaatacCTCAGTGCCACTGCTAGACTGAGAATAGTTCAACACGCACAAATATCCAACAGATGAGATtatgtctctgactttacaccAGCAAGTGGCATTGTTCAGTGCGACCAGGATCTTCACTGTCATATGGAGGCTGCAGGAAGCTGATGAAGGTGCAATAGCGCCCCCTTTCTTCGAGGAGGGCTCGACGCACagcctgtttctctgtctcctCCATCAACAGATACATATCGCTTACATCCTGCATAGCACTGTCCAGCTGGGGCTGCAGCCCACCTCgacctgagagaaagagagagagagacaaaaaggaaGTCATAATCAGTGCATTATGGAGCACTAATTCAGTCATCATGCACTGACAGATGTAACATGAGCTGCCCAATCAGGCGACAGTTATGACAGACGAGAACACATGAGATGTTCGGAGAGGATGTCAGCACAGATGTTCCACATGAGGTCACTATCTGATGAAAACAGATTATGGTGCAGAATGTCAGTGGCGACAGAACACTGTCTGCACTTCCATGCAGGAAACACCTTCACTAATAGATGAAATCAGGACAGTTACATGGACAATGAGATACAAATGGATGGGCCTATACAAACACAGTCTTTAGAAGATCCCACAATTCCCTATTGTTGgatattttcataaaatgtaaGCATGTTGTGTCTTATATGGAGAATAGTAATGTGTATGCATTGGAGACATGCAGGAAATAATGAATTCCAGAGTTGACAGATTGCAGAAATGAAGCTAGAGGGAGGGATAAAATCGCTCGAGTGACATGAAATAGAGTCTAGTCTAGTGCAGAAGCGAGTGTGGTGAGGTAAGAAGCTACTGTTTAAAT

Function

NR:

description
PREDICTED: MTSS1-like protein isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214177 True 1687 TUCP 0.47 2 13733945 13736102
XR_001518691.2 False 1079 lncRNA 0.45 5 13735253 13742500

Neighbor

gene id symbol gene type direction distance location
uri1 uri1 coding upstream 58565 13666685 ~ 13675380 (+)
spata2l NA coding upstream 69612 13659930 ~ 13664333 (+)
vps9d1 vps9d1 coding upstream 86170 13618688 ~ 13647775 (+)
mlycd mlycd,LOC107583902,LOC107722462 coding upstream 933570 12783799 ~ 12800375 (+)
utp4 utp4 coding upstream 1209833 12515462 ~ 12524112 (+)
cry1 cry1,cry1ab,LOC107672239,LOC108426403,LOC103023024 coding downstream 218555 13961055 ~ 13972324 (+)
LOC103042895 LOC108425440,LOC107740436,LOC107583921,LOC107672215,LOC107749314,LOC107553958 coding downstream 265515 14008015 ~ 14022424 (+)
LOC103043515 LOC108419231,LOC105022153 coding downstream 317303 14059803 ~ 14075538 (+)
LOC103047487 slc17a8,LOC107672209,LOC107583818,LOC107553956 coding downstream 487980 14230480 ~ 14247822 (+)
nr1h4 nr1h4,LOC106573302,LOC106561422,LOC107672305 coding downstream 509896 14252396 ~ 14277266 (+)
G157943 NA non-coding upstream 388481 13275460 ~ 13345464 (+)
G157933 cdh13,LOC107684661,LOC107722459 non-coding upstream 751474 12974488 ~ 12982471 (+)
G157926 NA non-coding upstream 871289 12862389 ~ 12862656 (+)
G157920 zgc:173742,LOC108415671,LOC107684664,LOC107553995,LOC107749320,LOC108264272 non-coding upstream 975856 12741848 ~ 12758089 (+)
G157905 NA non-coding upstream 1072837 12655809 ~ 12661108 (+)
G158023 NA non-coding downstream 106142 13848642 ~ 13849299 (+)
G158045 mterf2 non-coding downstream 241446 13983946 ~ 13987158 (+)
G158038 ric8b non-coding downstream 345966 14088466 ~ 14092532 (+)
G158068 NA non-coding downstream 373819 14116319 ~ 14116843 (+)
G158085 NA non-coding downstream 406986 14149486 ~ 14150489 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other upstream 992943 12735519 ~ 12741002 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other upstream 1367175 12340006 ~ 12366770 (+)
hipk2 hipk2,LOC107722467 other upstream 2590474 11031065 ~ 11143471 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other upstream 2979247 10751699 ~ 10754698 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other upstream 3019963 10700788 ~ 10713982 (+)
LOC103042073 LOC103042073,LOC108418727 other downstream 231321 13973821 ~ 13980025 (+)
G158369 NA other downstream 1307722 15050222 ~ 15050718 (+)
LOC111194769 NA other downstream 1385868 15128368 ~ 15137270 (+)
c18h11orf16 NA other downstream 1563712 15306212 ~ 15315552 (+)
LOC103041858 NA other downstream 2025555 15768055 ~ 15768661 (+)

Expression


Co-expression Network