LOC103042073 (LOC103042073,LOC108418727)


Basic Information

Item Value
gene id LOC103042073
gene name LOC103042073,LOC108418727
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 13973821 ~ 13980025 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU214245
GGTCGGTCTTTATGTCACGCgggatgagacgggaggcggacgtttgAGCGGGTCAGAGTTTAAGTTCTTTTTGGACAAGATCACAGCCGTGAGTAAGCCAGGAAAGAAAAACCTGCTGGTATGGGGCAGGTATACCTGGTTCTCTTGCCCAGAGGGTGTTTTACCCCTGGCCAATACTCTCCATGTGATTCTGACCAAAAAGCTGAGGTCTCCCCCAGAGCTCGCCGACTACATCTGTGAGGACTTTGATGAGGCGATCCGCTTGGCCTCACAGCCTCCACTCAGTGACCTGATAGAAACCATCTGGGTCATCGGAGGAACTGAGGTCTACAGGGAAGCTATGGAACATCCATGGTGTGATCTAATCTACCTCACTGACATCATGGCTGACTTCGACTGTGATGTTTTCTTCCCAGATTTCGATCGGAATATTTATAGGAAACAAAGCAGGTTTCCTGGTGTCCCACATGAGATCCAAGAAGAAAATGGAattaagtttcagtttcaagtcTTTAAGAAAATGTGTTGACCAATAAGCAACAATGAAAATATAGGACAatatatttttccaatttttatgaggttttatacttttttgcaattaaataaaatactaaaaaa
>XM_007250532.3
AATCACAGCATCCGATCAATAGGTTCAATGTCCGGGCGGAAACCGCGCGCCTCCACCTACCACCGCTGCGCGTGCGACTACACCCCTCAGCAGCGTCCGGAGCAGCGGCGGGGATGAGCGGGCAGGACGGAGCGCAGCGGAAGCCGATACGCCTCATCGCGGCCGCCTGTAACAACATGGGCATAGGCAAAGACGGCCGGCTACCGTGGAGCATTCCGTCAGAGTTTAAGTTCTTTTTGGACAAGATCACAGCCGTGAGTAAGCCAGGAAAGAAAAACCTGCTGGTATGGGGCAGGTATACCTGGTTCTCTTGCCCAGAGGGTGTTTTACCCCTGGCCAATACTCTCCATGTGATTCTGACCAAAAAGCTGAGGTCTCCCCCAGAGCTCGCCGACTACATCTGTGAGGACTTTGATGAGGCGATCCGCTTGGCCTCACAGCCTCCACTCAGTGACCTGATAGAAACCATCTGGGTCATCGGAGGAACTGAGGTCTACAGGGAAGCTATGGAACATCCATGGTGTGATCTAATCTACCTCACTGACATCATGGCTGACTTCGACTGTGATGTTTTCTTCCCAGATTTCGATCGGAATATTTATAGGAAACAAAGCAGGTTTCCTGGTGTCCCACATGAGATCCAAGAAGAAAATGGAattaagtttcagtttcaagtcTTTAAGAAAATGTGTTGACCAATAAGCAACAATGAAAATATAGGACAatatatttttccaatttttatgaggttttatacttttttgcaattaaataaaatactaaaaaatata
>XM_015606139.2
ATTATAAATCACAGCATCCGATCAATAGGTTCAATGTCCGGGCGGAAACCGCGCGCCTCCACCTACCACCGCTGCGCGTGCGACTACACCCCTCAGCAGCGTCCGGAGCAGCGGCGGGGATGAGCGGGCAGGACGGAGCGCAGCGGAAGCCGATACGCCTCATCGCGGCCGCCTGTAACAACATGGGCATAGGCAAAGACGGCCGGCTACCGTGGAGCATTCCGTCAGAGTTTAAGTTCTTTTTGGACAAGATCACAGCCGTGAGTAAGCCAGGAAAGAAAAACCTGCTGGTATGGGGCAGGTATACCTGGTTCTCTTGCCCAGAGGGTGTTTTACCCCTGGCCAATACTCTCCATGTGATTCTGACCAAAAAGCTGAGGTCTCCCCCAGAGCTCGCCGACTACATCTGTGAGGACTTTGATGAGGCGATCCGCTTGGCCTCACAGCCTCCACTCAGTGACCTGATAGAAACCATCTGGGTCATCGGAGGAACTGAGGTCTACAGGGAAGCTATGGAACATCCATGGTGTGATCTAATCTACCTCACTGACATCATGGCTGACTTCGACTGTGATGTTTTCTTCCCAGATTTCGATCGGAATATTTATAGGAAACAAAGCAGGTACATGCTGTCCACAACCGTGTCTAAAAGttaatcagcaaaaaaaaaagatctggtGTTTCTGTGCTTTTACAAAAGTTGGGTATCTTTCATTCTATGTAAATTCTGTGTTTACTATAAAGCTTTTTACATGAACTGCTAGACCACAACATGACCTGCTGTGGCCCTTGTGTAATAACTAAGTTCTTTCTGAGCACAATCTTAatttctttct

Function

NR:

description
dihydrofolate reductase-like isoform X2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0006545 glycine biosynthetic process biological_process
GO:0050661 NADP binding molecular_function
GO:0004146 dihydrofolate reductase activity molecular_function

KEGG:

id description
K00287 DHFR, folA; dihydrofolate reductase

RNA

RNA id representative length rna type GC content exon number start site end site
TU214245 False 621 lncRNA 0.44 6 13974731 13980021
XM_007250532.3 False 791 mRNA 0.48 6 13973827 13980025
XM_015606139.2 True 836 mRNA 0.49 6 13973821 13979838

Neighbor

gene id symbol gene type direction distance location
cry1 cry1,cry1ab,LOC107672239,LOC108426403,LOC103023024 coding upstream 1497 13961055 ~ 13972324 (+)
uri1 uri1 coding upstream 298441 13666685 ~ 13675380 (+)
spata2l NA coding upstream 309488 13659930 ~ 13664333 (+)
vps9d1 vps9d1 coding upstream 326046 13618688 ~ 13647775 (+)
mlycd mlycd,LOC107583902,LOC107722462 coding upstream 1173446 12783799 ~ 12800375 (+)
LOC103042895 LOC108425440,LOC107740436,LOC107583921,LOC107672215,LOC107749314,LOC107553958 coding downstream 27990 14008015 ~ 14022424 (+)
LOC103043515 LOC108419231,LOC105022153 coding downstream 79778 14059803 ~ 14075538 (+)
LOC103047487 slc17a8,LOC107672209,LOC107583818,LOC107553956 coding downstream 250455 14230480 ~ 14247822 (+)
nr1h4 nr1h4,LOC106573302,LOC106561422,LOC107672305 coding downstream 272371 14252396 ~ 14277266 (+)
LOC103046676 LOC108430366 coding downstream 300874 14280899 ~ 14301400 (+)
G158023 NA non-coding upstream 124522 13848642 ~ 13849299 (+)
G157943 NA non-coding upstream 628357 13275460 ~ 13345464 (+)
G157933 cdh13,LOC107684661,LOC107722459 non-coding upstream 991350 12974488 ~ 12982471 (+)
G157926 NA non-coding upstream 1111165 12862389 ~ 12862656 (+)
G157920 zgc:173742,LOC108415671,LOC107684664,LOC107553995,LOC107749320,LOC108264272 non-coding upstream 1215732 12741848 ~ 12758089 (+)
G158045 mterf2 non-coding downstream 3921 13983946 ~ 13987158 (+)
G158038 ric8b non-coding downstream 108441 14088466 ~ 14092532 (+)
G158068 NA non-coding downstream 136294 14116319 ~ 14116843 (+)
G158085 NA non-coding downstream 169461 14149486 ~ 14150489 (+)
G158086 endouc,LOC108425714,LOC107749311,LOC107686338,LOC107672228 non-coding downstream 171393 14151418 ~ 14157033 (+)
LOC107197649 LOC108416831 other upstream 231321 13733945 ~ 13742500 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other upstream 1232819 12735519 ~ 12741002 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other upstream 1607051 12340006 ~ 12366770 (+)
hipk2 hipk2,LOC107722467 other upstream 2830350 11031065 ~ 11143471 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other upstream 3219123 10751699 ~ 10754698 (+)
G158369 NA other downstream 1070197 15050222 ~ 15050718 (+)
LOC111194769 NA other downstream 1148343 15128368 ~ 15137270 (+)
c18h11orf16 NA other downstream 1326187 15306212 ~ 15315552 (+)
LOC103041858 NA other downstream 1788030 15768055 ~ 15768661 (+)
LOC107197617 NA other downstream 1791270 15771295 ~ 15771945 (+)

Expression


Co-expression Network