G158238


Basic Information

Item Value
gene id G158238
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 14560650 ~ 14562131 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU214518
CTCAGTTAGTAAACTCTCTGTCCTTACAGTATGCCGAATGAGCTAAGAGCATATGCTTGTGTAAAGGAAACAGGCTATTAGTACAACAGATGGTGATTTGATCTAATTCTCTTAATCTGAGACTTTAAAGTTGGCACAAGAAGCCCTGCAGGACTCACCAGCTCCTGGATCCAGGCACTGTAACTGGGAGGGGTCAGACCCATCTGAATAAGGCTGGCTCCCAGCAGAGCCAGGAGCAGCAGAGGAGTCACATACTTCCACATGTAGTAATAGTAACGAAATGGTGTGAAGCCCAGCATATCCTTTAAATCGTCAAAAAAACTTGTCAGTTCCATAGACCCACGCTACAGCCATGTTTTCCAGAAACACTACGATGAGGAGGGGCAGTGTTGCAGAGTAGTCATCAAACATGGTCACAAAGTAGTTTCCTGATCGCTGAACAAAGATCAGGCCAATACCAAACGCCAAGAAACAGCAGCCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214518 True 482 lncRNA 0.46 2 14560650 14562131

Neighbor

gene id symbol gene type direction distance location
LOC103026424 ctsd,LOC107686244,LOC107672285,LOC107740314 coding upstream 3387 14546807 ~ 14557263 (+)
bhlhe41 bhlhe41 coding upstream 21286 14533728 ~ 14539364 (+)
LOC103025600 itpr2 coding upstream 46504 14405581 ~ 14514146 (+)
eea1 eea1 coding upstream 185847 14343739 ~ 14374803 (+)
nudt4 nudt4,LOC107553971,LOC107740279,LOC107672310,LOC107686239,LOC105898052 coding upstream 218330 14323212 ~ 14342320 (+)
lrriq1 NA coding downstream 26327 14588458 ~ 14632192 (+)
alx1 alx1 coding downstream 74661 14636792 ~ 14643499 (+)
nts nts coding downstream 169661 14731792 ~ 14737727 (+)
LOC103031823 LOC108263962,LOC107740339,LOC107583811 coding downstream 255937 14818068 ~ 14830344 (+)
LOC103031502 eif4g2b,LOC108431851,LOC107730533,LOC107569652,LOC103379577 coding downstream 545232 15107363 ~ 15120305 (+)
G158093 ppfibp1 non-coding upstream 370608 14168959 ~ 14190042 (+)
G158086 endouc,LOC108425714,LOC107749311,LOC107686338,LOC107672228 non-coding upstream 403617 14151418 ~ 14157033 (+)
G158085 NA non-coding upstream 410161 14149486 ~ 14150489 (+)
G158068 NA non-coding upstream 443807 14116319 ~ 14116843 (+)
G158038 ric8b non-coding upstream 468118 14088466 ~ 14092532 (+)
G158335 NA non-coding downstream 348827 14910958 ~ 14919932 (+)
G158357 NA non-coding downstream 416612 14978743 ~ 14980092 (+)
G158359 NA non-coding downstream 445374 15007505 ~ 15008083 (+)
G158381 NA non-coding downstream 507655 15069786 ~ 15070409 (+)
G158417 NA non-coding downstream 561007 15123138 ~ 15123669 (+)
LOC103042073 LOC103042073,LOC108418727 other upstream 580625 13973821 ~ 13980025 (+)
LOC107197649 LOC108416831 other upstream 818150 13733945 ~ 13742500 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other upstream 1819648 12735519 ~ 12741002 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other upstream 2193880 12340006 ~ 12366770 (+)
hipk2 hipk2,LOC107722467 other upstream 3417179 11031065 ~ 11143471 (+)
G158369 NA other downstream 488091 15050222 ~ 15050718 (+)
LOC111194769 NA other downstream 566237 15128368 ~ 15137270 (+)
c18h11orf16 NA other downstream 744081 15306212 ~ 15315552 (+)
LOC103041858 NA other downstream 1205924 15768055 ~ 15768661 (+)
LOC107197617 NA other downstream 1209164 15771295 ~ 15771945 (+)

Expression


Co-expression Network