CI01000012_09764936_09778598 (CDHR1A)


Basic Information

Item Value
gene id CI01000012_09764936_09778598
gene name CDHR1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9764582 ~ 9779401 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_09764936_09778598.mRNA
GTTTAAAATCAGGTGACTCTTTTTATAATACTGTATTTCATCCAGTATTAATTGGTTTCTTTGAGACAGAGATCTCTAAATGTGGGATTTCAGTAGTACTACATCTAAGAAGATGGTCTCTAACCTGTCATATCAGGTCAGGTGTGCTACTCGTGAAGCCCTCTAGTGGCCATTAGTTGCCATGCTGCAAAGATGGGCTTCTAAAAATGGGCCCAGGGTTAAGGCGTGTCATGGGATTAGGCTCTTAGCACCTGTCTTAGCTCTACTCAATCTGAAATAAACACCCTTAGACGGACTCCTCCGTAGCTCTCTTCACTAGTACGCTGTCTGCTGTAAATGCTTTGCTTTATTAGGATGAAGAATGCTATGGAAATACAGTTTTCATCATTTCTTCTGCTAGCGCATTTCTGCTTTGCACAGATTGACTACGCACCCTATTTCTATGATAATGGGCCCAACAGTAACAACGGTAATATGGCAATGTTCAATCTCCCAGAGGATACGCCAAAAGGAACACATATATACGTTCTTAATGGAACTGACCCCGAAGACCAGCCAGTAAAGTATGGAATGACCTTTGAACCCGGACACAAAGAATATTTTCGTGTTCATCCCAAATCTGGAGCAGTAACTCTAATAGAGGAACTCGACAGAGAGGAACAAGATGAAATTGAAGTCTTTGTCAGTATCTCAGATGGCCTTAATAAAGTAGTTGAAAAGGTTTCGGTTATTGTCATGGATGCCAATGATGAGAGACCACAGTTTCAGAACATGCCTTCCATCGTAGATGTGCCAGAGAACACTACATCTGGGAGCAGCATCTACAAAGTGCAGGCAGTGGACAGAGATGCCGGATCAGGGGGATCAGTCACTTACTTCCTCCAGAGCAGTGAACCGAGCACAAAGTTTGCCATCGACCACCATAGTGGCGTGCTGAGGATAAAACCAGGCGAAGCCCTCGATTATGAGAAATCCCGCACACATTTCATCACTGTGGTGGCAAAGGATGGAGGTGGCACTTACAAGGGCAAGCAACAAGTGATGTCATCATCAGCCACTTTGACGATAAATGTGATTGACATTCAAGACACTCCTCCTGTGTTTGTTGGAACTCCTTACTTTGGTTATGTCTATGAGGTCTCTTCGCCTGGATCTGAGATATTTACAGTTTTTGCCAAAGATGGAGACATGGATAATCCAAATCCAATCATGTATTCAATAGACTCTGGAGCAGATGGGGTTTTTGCCATCAATAAAACCAGTGGATGTATCACTCTGAAGGTGTACCCAGCAGACCTGAGGAGAGAAGTCTTTAATATTAAAGTCAAGGCTTCAGAGGTTAGTCCAGAAGGAAAACGCTTGGACTTTGCAGTCACCACAGTGACTATTAAGGTCGTAGATCTGAACAACCATCCACCCACATTCTTTGGAGAGAATGGACCACAGAACGTGTTCGAGTTAACTATGTATGAGCATCCTCCAGAGGGAGAGTTCCTGAGGGGCTTGAAAATCACAGTCAATGACTCCGACCAGGGATCAAATGCAAAATTCCACCTCAGATTGGTGGGCCCAGGCCGCATGTTACGAGTGGTCCCTCAAACCGTTCTGAATGAAGCCCAAGTCACCGTCCTTGTGGAGGATTCTGCTGCAATGGATTTTGAGAAATCACAATTCCTGACATTTAAGCTCCTCGCTGTAGAGATTGACACACCTGAGAGATTCAGTGCTACGGCAGACATAATCATTCATCTGCTAGACACCAATGATAACGCTCCAAAATTCTCCTCTGATTTTTACATCGCCCGGATTCCAGAAAATTCACCCGGAGGATCCACTGTTGTGTCTGTGACCGCCACAGATCCTGATTCTGGTCTTTGGGGTGTGGTCAAATACTCCATCTATGGCTCAGGAGCGGACCTGTTTTTCATTCAGGCTGATTCTGGAATCATCTACACACAGCCCTGGGCCAGTCTAGATGCCGAGGTTAAATCCAAGTATAACTTCTATGTGAAGGCCGAAGACACTGAAGGAAAATACAGCCTTGCAGAAGTCTTCGTCTCCATTATGGACCTCAATGACCATTCACCAGCGTTTAATGAAAACTCTCTAGAGAAAACAATGGTGATTGGTGCACCAGTGAAAATAGAGGCGATTGATGAAGATGCAGAAGAGCCCAACAATGTCATTGAATACTCCATTATGAAAGCCGACCCAGACAACATATTTGACATTGATGCAGACACAGGAGAAATAAAGCTGAAGCCTTACATCAAGTCCATGGACATAGTCCAGAATATCACCAATCAGAAAGACTGTACCTGGTCTGTGGTTGTTCAGGCCAAAGACAGAGGCTCACCATCCTTCAGCACCACCACAGTGATAAAGATTGACATCACAGAAGCGATCAAATCCAGATTGATTTCATACTTCTTGAGTCTGAGAACTCGGCCCTGGACTGTTTTCAGCATTTGTTTGAGCATTGTAGTCCTCGCCATCTGTCTGACCGTTTTCATATCCACCATAATTTTCTGGAAATCTGTGAAAAAGTCCCGGACTCAACTCAAGGGACCTTTGACGTCCTTTTTAATGAAAAGTAGGGAAAATCCCATGCATATCCTAGGCTTGATCTGTGGTGTCATTATGATCATGGTTTTTGTGACAGTCTTGATCTCTACTATTATATACGTGAGAAACGTCAAGTCCAACAAGATCCTACCCTCCCGTCGCATCATACGCAGGAAGCGTAAACCCCGGAGACAAGACGAATTCCAGCAACCGTTCAGAGATGAACGGGAGATCCCTACAACAGACAATGTCAACTGTAACAATAACGTCAAAGTGTATTCTCATCATCGAGCACCTCCGTCGCCTCCAAATGCCCCCATAATGCCCCCGCCGTTGCCAAGTCATTATAGACGCGCTGACCGCGAGTGGACGGTACCTACGGTTTCCGCCTCGGTGGCCTCCAAGACAAAGAGAAGATCTCAAAGGGGTAAAGACAATCCTGTCAACACAGCACTGGTTTCTGAGCTCAAACTTAGACTGGAGCAGAAAAACATGGCCAACCGATACTGATTATAGTGAAATGTAGAAATACCAGTTTTCAATGGAGAGAAGACATGTCCCTCTGCTTAATCTCTGTCGTGAAGATTTCAGGCAAGATTTGAGCAAGGACAAGATCTCAGCAGGACAACTCTGCTACTTACCGTATGCATGCAGAGTTCAGCTGGGATTGCAGGTTGAATCTAGTGGAGATGGGGGAAAGTGTCAATTGCTAAGACTAACTAATACCCTGCTAATCAGCATGCTAAGACAATGCGTACTGCCCTCTTCTGGATGGAAAATAATTGGTTCACATTTACTCTATAGTTCTCTGACATTTCTCCATAGTTCTCTGACATTTCTCCATCTGTGGATACTTTTCATCAAGAAATTAAACAAAAGTCTTTTTTAACTGTGGATAAATGAAATATGCCTCTGAAGTGAATTTTATTTTTTCAAAATCATCAACTTTTTACTCACTATATGGTTTTTAAAAGGGAACAATAGTTTGTTTTTTTTCCCCCAAAACTGAGTCTCATACAATGTCTTTGGACCTTGACTGAACAATAACAATACCAAATTCTAAACATTAATTTGCTGGTTTATTTGGTAAATGATTCTGATAGACACCTGAAAACCACAAACAGATCCAATATTATACAATTGAGTAGGCTAAATTTAGTTTCCTATCCTTCAGTGAGGAAAACCATACAGTTACATTATCATGTTGTGCTTTTTTTTTCTTCCAATTTAATGTATATTGTCATTTTTCATGCAGTTCAGTATTAAATGTAGAATAATTGATGTGATCTCTGTTTATATTCAACCTTTTGTAA

Function

symbol description
cdhr1a Predicted to enable calcium ion binding activity. Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in cone-rod dystrophy 15. Orthologous to human CDHR1 (cadherin related family member 1).

NR:

description
Protocadherin-21

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K16501 CDHR1, PCDH21; cadherin-related family member 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_09764936_09778598.mRNA True 3878 mRNA 0.43 18 9764582 9779401

Neighbor

gene id symbol gene type direction distance location
CI01000012_09503160_09508216 HIF1AN coding upstream 256206 9501951 ~ 9508376 (+)
CI01000012_09487818_09493571 WNT8B, WNT8B.S coding upstream 270336 9487818 ~ 9494246 (+)
CI01000012_09479056_09484643 SCDB coding upstream 279579 9479056 ~ 9485003 (+)
CI01000012_09474489_09475937 TRMT2B coding upstream 288580 9474489 ~ 9476002 (+)
CI01000012_09412867_09415489 NA coding upstream 348903 9412867 ~ 9415679 (+)
CI01000012_09796386_09801947 RGR, RGRA coding downstream 16890 9796291 ~ 9802544 (+)
CI01000012_09812937_09814478 SLC18A3, SLC18A3A coding downstream 33020 9812421 ~ 9815417 (+)
CI01000012_09815706_09822346 CHATA, CHAT coding downstream 36305 9815706 ~ 9822671 (+)
CI01000012_09828421_09828926 NA coding downstream 49020 9828421 ~ 9829388 (+)
CI01000012_09977219_09983804 NA coding downstream 197610 9977011 ~ 9983866 (+)
G75055 NA non-coding upstream 22334 9741467 ~ 9742248 (+)
G74017 NA non-coding upstream 133775 9616330 ~ 9630807 (+)
G74014 NA non-coding upstream 148493 9612580 ~ 9616089 (+)
G74045 NA non-coding upstream 188575 9575594 ~ 9576007 (+)
G74040 NA non-coding upstream 209390 9554657 ~ 9555192 (+)
G75087 NA non-coding downstream 78889 9858290 ~ 9858518 (+)
G75089 NA non-coding downstream 80278 9859679 ~ 9859954 (+)
G75113 NA non-coding downstream 141972 9921373 ~ 9922152 (+)
G75115 NA non-coding downstream 152133 9931534 ~ 9931876 (+)
G75147 NA non-coding downstream 206711 9986112 ~ 9986370 (+)
G73578 NA other upstream 1396955 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 1956727 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 3840277 5922385 ~ 5929186 (+)
G71623 NA other upstream 3947977 5813517 ~ 5816605 (+)
G71548 NA other upstream 4203149 5550493 ~ 5561433 (+)
CI01000012_10223957_10235955 NA other downstream 442554 10223697 ~ 10236276 (+)
G75533 NA other downstream 1365416 11144817 ~ 11145739 (+)
G76385 NA other downstream 2851354 12630755 ~ 12675666 (+)
G76374 NA other downstream 2966130 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 3236105 13029435 ~ 13038899 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location