G158359


Basic Information

Item Value
gene id G158359
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15007505 ~ 15008083 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU214697
GCTAGGGGCCGGCCGAGTGCTTCTTCGGCCGCCAGGGGGAGGTCTTGAGCCCCTAATCAGACCTGATCCACTCCACCTGGGTTTGCCCCTATATAAACCCTGAGATTCAGGTCCTCGgggctggatctttgaagctcgtgggagcgaatctatgccggtttCTAGACCGAGCCTCTGCTCTTTTTCCCCTTCTCTTCCTGCTATCCCTTTGGAGAGAGTATGATCCAGCACCGCTGGCATACTCCTCCCGCATAAGTAGCTTCCTCTGTCCCTTTATATCTCGAGTGTGGTGTAGTCGTGTTGAGCGGTGTGCTCCGCGGCTAACCCCCCTTTCTCtcgggtctgtgtgtgtgtttgtgtgtgtgtggtagccgCTGCGAGGCGCGCGGTGTGCTCACCTTTTCTCTCCCCTCGCTGTTCCTCTtctctctggtggagcagcgtttaATCCAAAAGCACCCCAATtcacttctttgtttagtttggaagCTCTTTTGTTTTTACCTCGCGCCATAAGAGGTAGCCGTTAGCTTCCGCGGCGAGTCTTGTTTACATTCTCCCCCACTATTTCACTCACGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214697 True 579 lncRNA 0.55 1 15007505 15008083

Neighbor

gene id symbol gene type direction distance location
LOC103031823 LOC108263962,LOC107740339,LOC107583811 coding upstream 177161 14818068 ~ 14830344 (+)
nts nts coding upstream 269778 14731792 ~ 14737727 (+)
alx1 alx1 coding upstream 364006 14636792 ~ 14643499 (+)
lrriq1 NA coding upstream 375313 14588458 ~ 14632192 (+)
LOC103026424 ctsd,LOC107686244,LOC107672285,LOC107740314 coding upstream 450242 14546807 ~ 14557263 (+)
LOC103031502 eif4g2b,LOC108431851,LOC107730533,LOC107569652,LOC103379577 coding downstream 99280 15107363 ~ 15120305 (+)
LOC103024643 NA coding downstream 135989 15144072 ~ 15148635 (+)
rnf141 rnf141,LOC107672299,LOC107740332 coding downstream 141968 15150051 ~ 15155609 (+)
nrip3 nrip3 coding downstream 290862 15298945 ~ 15304011 (+)
LOC103021723 LOC108426425 coding downstream 313187 15321270 ~ 15331330 (+)
G158357 NA non-coding upstream 27413 14978743 ~ 14980092 (+)
G158335 NA non-coding upstream 87573 14910958 ~ 14919932 (+)
G158238 NA non-coding upstream 445374 14560650 ~ 14562131 (+)
G158093 ppfibp1 non-coding upstream 817463 14168959 ~ 14190042 (+)
G158086 endouc,LOC108425714,LOC107749311,LOC107686338,LOC107672228 non-coding upstream 850472 14151418 ~ 14157033 (+)
G158381 NA non-coding downstream 61703 15069786 ~ 15070409 (+)
G158417 NA non-coding downstream 115055 15123138 ~ 15123669 (+)
G158419 NA non-coding downstream 116706 15124789 ~ 15124994 (+)
G158429 NA non-coding downstream 134089 15142172 ~ 15142472 (+)
LOC107197619 NA non-coding downstream 195101 15203184 ~ 15213993 (+)
LOC103042073 LOC103042073,LOC108418727 other upstream 1027480 13973821 ~ 13980025 (+)
LOC107197649 LOC108416831 other upstream 1265005 13733945 ~ 13742500 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other upstream 2266503 12735519 ~ 12741002 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other upstream 2640735 12340006 ~ 12366770 (+)
hipk2 hipk2,LOC107722467 other upstream 3864034 11031065 ~ 11143471 (+)
G158369 NA other downstream 42139 15050222 ~ 15050718 (+)
LOC111194769 NA other downstream 120285 15128368 ~ 15137270 (+)
c18h11orf16 NA other downstream 298129 15306212 ~ 15315552 (+)
LOC103041858 NA other downstream 759972 15768055 ~ 15768661 (+)
LOC107197617 NA other downstream 763212 15771295 ~ 15771945 (+)

Expression


Co-expression Network