CI01000012_09782840_09786910 (LRIT2)


Basic Information

Item Value
gene id CI01000012_09782840_09786910
gene name LRIT2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9782610 ~ 9786910 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_09782840_09786910.mRNA
GTCACTCACATGTATGGAAACTGCATTAACCGGAATTCCTGCGGACATACCGGAAGATTTGACAAAAATCCGAATAGAGAAATCACAGCTAAGTGAAATACCAAAGGCAGCGTTTTCCCATATTAAATGTCTAAAGCATCTCTGGCTGAATTTCAATGACATCGCCATCATAAATATCAAAAGTCTGGAAGGTTTGGGTAACTTGACGGAGCTCCGGTTGCAGGGTAACAAACTTCGTTCAGTACCGTGGACAGCGTTTGAGGAAACGCCCAACCTCAAGATTCTGGACCTGAAGCACAACCGCATTGACGCCCTCCCTGAACACGCGCTAAAGTTTTTACCAGGACTGACCTATTTAGATCTGTCCTCTAATCAACTCTCGGTCGTTTCTAAAGACGTCTTTCTGAACTGGCCTCTCTACCACGCAGAAAACAAGCATGAAAAACCTACAGCGTCCAACGTTGTTCTGGCGCTTCACGGCAACCCGTGGCTGTGCGACTGTCGCCTGGGAGGCTTCATTGAGTTTATCAAATCGTTGAGTCCCCCGTTCATTCTAATGAACGCGTATTTGACATGCTCTGGCCCAGAATTCAAGGCAGGGAAATTTTTCCATGAGGTCGATTTAAAGACGTGTGTGAAGCCAGTGGTCAGCGCCCCGGTCAACAACATCACCGTGCCTTTAGGTGGGAACATCACGCTAACATGCTTTGCCACGGCCAGACCTGAACCTGCCATTCGGTGGACATATGGTCTTAAGATACTAAGAGGATTTCGTGAGATTCAGAGCCGTGTAGATGAAGACACTATCAGGACTCAGCTGATCATTCCTTCGCTCCATCTGGCCGACAGAGGACTCTACACCTGCACTGCTAACAATTTCATTGGCAATTCCTCCATTGGTATTTTACTGGATGTGAAATCTCCGGAAGGCTCTCTGTCTCATTCCTCAGACCTCCCTGCTGCCGTCGCTGAGGAAAATGTTTACATCGATATCCGTATTGCCAAGCAGACAGTGTATGGCATTACAATTGAGTGGCGTGCTGTAACAGACAATCCAGCAGAAACCTGGTTCACCATTCATTTTGGCCGCTATGACACAGTTAAGAAAGAGCAGATATACATCGGACCAGGTATTAACACATACTCTGTCACAGACCTGCTACCAGTCACGAAGTATGAAATCTGTGTTACTCTAAAGAACCAGGCTCCTCGGAACGGCCAGTGCATCGTGTTCGTGACAGGCAGCGATTTCAATGAAATGGAACAGAGGGAAAAGCTCATTCATATTGTCGTCATTGTACTTGCCATGGTGCTCGCTGTGCCTGCGGGAATGTACGCCTGCACTACCGATGCCAAGTTCAACTGCTTTGAGCGTTGCACGGAAATGTGGAGAAACAGGAGACATGCGGAGAGCTCGCACACGTCTGATGAGAGGCAGGGCACGTTTGACAGTCTCCAAGCTGCCAGTGATGAGGGCCTCTGCAAGGAGTCCAGCAAGGAGCGGAAGGCCCGACGAAGGTCTGCTGATAAGATACAGAAAACAAAAAATGAACGAAGACCAACAGCTGAGCTTTACTGACACTACACACTGAAAGACATCTATAGACTGATTAATACCCATGAAAGGAAAGCCTACATTGTCATCCAGCTTCAGTGGTCAAAAGGAGGAGAACTGAGTAAAGTTAATATGCTTGTTATGGATGCCACAATCTTCAGAAGAGAGTCTCAATTGATCATGAACTCACGGATCAGCTGCTGCTGGACAGGATTTTCCAAACTGGCAAAAACCAAAGGAAGCCATTGAATAAA

Function

symbol description
lrit2 Acts upstream of or within camera-type eye development. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human LRIT2 (leucine rich repeat, Ig-like and transmembrane domains 2).

NR:

description
Zgc:109962

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_09782840_09786910.mRNA True 1809 mRNA 0.47 2 9782610 9786910

Neighbor

gene id symbol gene type direction distance location
CI01000012_09754856_09756772 CHST3A coding downstream 25654 9754595 ~ 9756956 (-)
CI01000012_09589749_09615649 PAX2A, PAX2 coding downstream 166961 9588444 ~ 9615649 (-)
CI01000012_09513757_09517777 CUEDC2 coding downstream 264833 9513268 ~ 9517777 (-)
CI01000012_09465977_09473475 DNAJB12A coding downstream 309135 9465948 ~ 9473475 (-)
CI01000012_09419200_09460604 SPOCK2 coding downstream 321322 9419095 ~ 9461288 (-)
CI01000012_09789066_09792437 LRIT1A coding upstream 785 9787695 ~ 9792437 (-)
CI01000012_09830411_09851586 OGDHL coding upstream 43255 9830165 ~ 9851870 (-)
CI01000012_09862141_09892366 PARGA, PARG coding upstream 74965 9861875 ~ 9892366 (-)
CI01000012_09894361_09922003 MYOFL coding upstream 106746 9893656 ~ 9922443 (-)
CI01000012_09926268_09941904 UNC5B coding upstream 139163 9926073 ~ 9942394 (-)
G75189 NA non-coding downstream 13101 9766445 ~ 9769509 (-)
G75004 NA non-coding downstream 140666 9641710 ~ 9641944 (-)
G75001 NA non-coding downstream 142961 9639446 ~ 9639649 (-)
G74997 NA non-coding downstream 145466 9636905 ~ 9637144 (-)
G74996 NA non-coding downstream 146212 9636147 ~ 9636398 (-)
G75212 NA non-coding upstream 29068 9815978 ~ 9817036 (-)
G75230 NA non-coding upstream 200455 9987365 ~ 9987685 (-)
G75645 NA non-coding upstream 299041 10085951 ~ 10086261 (-)
G75646 NA non-coding upstream 299365 10086275 ~ 10086512 (-)
G75647 NA non-coding upstream 302146 10089056 ~ 10089273 (-)
G74982 NA other downstream 206638 9575648 ~ 9576149 (-)
CI01000012_09400481_09401810 EIF4EBP2 other downstream 380642 9398076 ~ 9402378 (-)
CI01000012_09082056_09083285 NA other downstream 699121 9081877 ~ 9083489 (-)
CI01000012_09071892_09073410 NA other downstream 709153 9071371 ~ 9073457 (-)
CI01000012_09068458_09070536 NA other downstream 711943 9067906 ~ 9070765 (-)
G75608 NA other upstream 825005 10611915 ~ 10620871 (-)
CI01000012_12047175_12052116 NA other upstream 2262134 12046728 ~ 12052541 (-)
CI01000012_12079581_12084139 NA other upstream 2292026 12078936 ~ 12084260 (-)
CI01000012_12954694_12954954 SF3B5, BRAFLDRAFT_284483 other upstream 3167536 12954446 ~ 12957833 (-)
G77287 NA other upstream 3832366 13619276 ~ 13633819 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006051 lrit2 coding NC_007124.7 CM002897.2 29470442 ~ 29474304 (+)