G158381


Basic Information

Item Value
gene id G158381
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15069786 ~ 15070409 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU214719
gtcgcactacccccctccaaccggtcgcatgtgggcgtgacaaaggctttccctgcgtcgtccaattaaatcgttttaataaatgggaaatgctttttatataagctattattatttccaatacttaataaatataaatgtgtctttatagatataaatgtttgaatgagcttcattacactgtctagtgagcagtatataagctgaaaaaagcaaacttttccaattaaattacatattaatattttaaaaacccaccagagactccaacaatcacagcagcctttctcctcgctgacagagtccctgtgaatcagcggggattttataaagaacagggaagcctgaaacttctcttccaggcttctctggacgcttgaaagcggaactaaaatgttttcatgcgctgcgctgaggacgcgttacaggccaacacctgctctctgattggatagacgcattgcgttggacggactcatttgcataaagttcagctcggctcaacttttcatcgcatcgcatcccccgctctcgacgcgtcggacccatgatgcaccgcgcgactgcgtctgacggaggcggcgcttcccattgaaaatgaatgggatccgtcgctgtgcgttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214719 True 624 lncRNA 0.45 1 15069786 15070409

Neighbor

gene id symbol gene type direction distance location
LOC103031823 LOC108263962,LOC107740339,LOC107583811 coding upstream 239442 14818068 ~ 14830344 (+)
nts nts coding upstream 332059 14731792 ~ 14737727 (+)
alx1 alx1 coding upstream 426287 14636792 ~ 14643499 (+)
lrriq1 NA coding upstream 437594 14588458 ~ 14632192 (+)
LOC103026424 ctsd,LOC107686244,LOC107672285,LOC107740314 coding upstream 512523 14546807 ~ 14557263 (+)
LOC103031502 eif4g2b,LOC108431851,LOC107730533,LOC107569652,LOC103379577 coding downstream 36954 15107363 ~ 15120305 (+)
LOC103024643 NA coding downstream 73663 15144072 ~ 15148635 (+)
rnf141 rnf141,LOC107672299,LOC107740332 coding downstream 79642 15150051 ~ 15155609 (+)
nrip3 nrip3 coding downstream 228536 15298945 ~ 15304011 (+)
LOC103021723 LOC108426425 coding downstream 250861 15321270 ~ 15331330 (+)
G158359 NA non-coding upstream 61703 15007505 ~ 15008083 (+)
G158357 NA non-coding upstream 89694 14978743 ~ 14980092 (+)
G158335 NA non-coding upstream 149854 14910958 ~ 14919932 (+)
G158238 NA non-coding upstream 507655 14560650 ~ 14562131 (+)
G158093 ppfibp1 non-coding upstream 879744 14168959 ~ 14190042 (+)
G158417 NA non-coding downstream 52729 15123138 ~ 15123669 (+)
G158419 NA non-coding downstream 54380 15124789 ~ 15124994 (+)
G158429 NA non-coding downstream 71763 15142172 ~ 15142472 (+)
LOC107197619 NA non-coding downstream 132775 15203184 ~ 15213993 (+)
G158449 NA non-coding downstream 177210 15247619 ~ 15249375 (+)
G158369 NA other upstream 19068 15050222 ~ 15050718 (+)
LOC103042073 LOC103042073,LOC108418727 other upstream 1089761 13973821 ~ 13980025 (+)
LOC107197649 LOC108416831 other upstream 1327286 13733945 ~ 13742500 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other upstream 2328784 12735519 ~ 12741002 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other upstream 2703016 12340006 ~ 12366770 (+)
LOC111194769 NA other downstream 57959 15128368 ~ 15137270 (+)
c18h11orf16 NA other downstream 235803 15306212 ~ 15315552 (+)
LOC103041858 NA other downstream 697646 15768055 ~ 15768661 (+)
LOC107197617 NA other downstream 700886 15771295 ~ 15771945 (+)
LOC103041352 NA other downstream 705015 15775424 ~ 15776166 (+)

Expression


Co-expression Network