G158417


Basic Information

Item Value
gene id G158417
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15123138 ~ 15123669 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU214755
GCTTTGTTCTGCCTCTGAGACTTCAGGTCCTCCTGAGCTCTGAAGATGTCGGACAGTGCTTGATGTTTTTCCCTCCAGTTCAGACACTCACTGATGCgctcctccttctctctgtccGCCAGCCTGCGCTCCTGATCAGCCTGCTGCTGCGCTTTCcctgctctctcactctgttcctcagcTGCTGCAGCCCTGCGCCTGGAGCTTGCctccctgcacacacacacacacacagctgcagctGTTACCTTCAGTCCACATCAAGAGTAAGacagcacacattcactaaaagaggaaaaaatgtcATCACTTTTCTTTAAGTTTTACATTCTCCTCCGTCAGCTCCTTCAGTCTGTGCCGCAGTGTGCTTCTCTCACTCTCCAGACtcttgttctcctccagcagaaACTGTTTCTCTCCAGACACTCTCTCTAGCTTTAGCTTCGTCTCAAAGTAGCTCTTCTCTGTCTGGGCCAGAAGCAGCTGTGCATTCGTGTGCTGTAAAACAATAGCAGTCTATAATCAGCTGAAT

Function

NR:

description
PREDICTED: mannan-binding lectin serine protease 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214755 True 532 lncRNA 0.51 1 15123138 15123669

Neighbor

gene id symbol gene type direction distance location
LOC103031502 eif4g2b,LOC108431851,LOC107730533,LOC107569652,LOC103379577 coding upstream 2833 15107363 ~ 15120305 (+)
LOC103031823 LOC108263962,LOC107740339,LOC107583811 coding upstream 292794 14818068 ~ 14830344 (+)
nts nts coding upstream 385411 14731792 ~ 14737727 (+)
alx1 alx1 coding upstream 479639 14636792 ~ 14643499 (+)
lrriq1 NA coding upstream 490946 14588458 ~ 14632192 (+)
LOC103024643 NA coding downstream 20403 15144072 ~ 15148635 (+)
rnf141 rnf141,LOC107672299,LOC107740332 coding downstream 26382 15150051 ~ 15155609 (+)
nrip3 nrip3 coding downstream 175276 15298945 ~ 15304011 (+)
LOC103021723 LOC108426425 coding downstream 197601 15321270 ~ 15331330 (+)
LOC111194727 NA coding downstream 210204 15333873 ~ 15335002 (+)
G158381 NA non-coding upstream 52729 15069786 ~ 15070409 (+)
G158359 NA non-coding upstream 115055 15007505 ~ 15008083 (+)
G158357 NA non-coding upstream 143046 14978743 ~ 14980092 (+)
G158335 NA non-coding upstream 203206 14910958 ~ 14919932 (+)
G158238 NA non-coding upstream 561007 14560650 ~ 14562131 (+)
G158419 NA non-coding downstream 1120 15124789 ~ 15124994 (+)
G158429 NA non-coding downstream 18503 15142172 ~ 15142472 (+)
LOC107197619 NA non-coding downstream 79515 15203184 ~ 15213993 (+)
G158449 NA non-coding downstream 123950 15247619 ~ 15249375 (+)
G158467 wee1,LOC108264466,LOC107686254,LOC107580369,LOC107758614,LOC107740329,LOC107583885 non-coding downstream 153954 15277623 ~ 15280021 (+)
G158369 NA other upstream 72420 15050222 ~ 15050718 (+)
LOC103042073 LOC103042073,LOC108418727 other upstream 1143113 13973821 ~ 13980025 (+)
LOC107197649 LOC108416831 other upstream 1380638 13733945 ~ 13742500 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other upstream 2382136 12735519 ~ 12741002 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other upstream 2756368 12340006 ~ 12366770 (+)
LOC111194769 NA other downstream 4699 15128368 ~ 15137270 (+)
c18h11orf16 NA other downstream 182543 15306212 ~ 15315552 (+)
LOC103041858 NA other downstream 644386 15768055 ~ 15768661 (+)
LOC107197617 NA other downstream 647626 15771295 ~ 15771945 (+)
LOC103041352 NA other downstream 651755 15775424 ~ 15776166 (+)

Expression


Co-expression Network