G158449


Basic Information

Item Value
gene id G158449
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15247619 ~ 15249375 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU214791
ATCGATTGATCTGTAGTTTTATTGAATCTTCATAAAACAAATGACCTGAAGTCTGGACATTATGCTGTTAGTTTGATGCAAACAGACACCATATTGTTCGTGGTTGAAACACCACAACATCTGAGAAAACATCCTGGTTAATGACACCACTCTGATACTGTAACATTTAATACTGCAGTCATGCCTCCATTAACAGCTCTGACCTCCACTGTTTTGTTTCTTATTAATCCATtcgaaaataaaaagtgttattttacacaaagtacaaaaaaaactattcctACACTGTATGTTCAAACATCCTCTCATTCTTCTTACATTATGTGTAATACTTTATTAATGctaattttaaattaatcttACTCTGTCTGATGCCCAGATTCTACTCTCTATAAGTTACAGGTTTAACAGTTTCCTACACTAAATTAAAGGCTTCAAAAAGGTTAAAGgttagacttttttttctttgaaatgcTTTATTTGACAGTACTTGGTTTATGgaatttaaactgaaaaaaaatatctttgacaattactttaaattagTGATTTTTGTGGAAAATCTGTCATCCCTTTGGCAGAAAATACATCTAAATCAACATCCTCATATATAGTGTggcactttaaaaaaatcaaatgtataAAATCCCTTCAAAGCAGCCACAAAAGTGGCATAATGCCCTGAAATGTTACAGTATGACTGGAATGAGAACAGATAGCTGGAGATTAGACTCTACTATACAGTCACACACGCCGTCTAACAGGTCCCTTCGAGCGGAATCAGGCACAGAGCCGACGTGGGCAGTGTTTCCACTTCAGTAGTGGttatatttacagaaatgttgGATCAAGCGTTGCACTGGGACTGAGAGAAAACAGGTGGAGTCTCACTGGGTCTGAGTGGGCCTGTTTTTCCTCTCCTGCCAGTCTTTCTGTCTCAGGCTCAGCTCAGCCTCGGTGAAGGCCGCAGGGCCCCAGTTAGTGATCTTCTGTGGCCCCTTTGAGCCTGCAAGCACGcgtgtacatacacacCAGGCTGGATTAGACGTATGAGTCCTTCATGTTGGGCGACTTTATCCTTCCAGCTCTTTGTATTATTGGCAGCATCCTCTAGTTTCTTCATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214791 True 1124 lncRNA 0.39 2 15247619 15249375

Neighbor

gene id symbol gene type direction distance location
rnf141 rnf141,LOC107672299,LOC107740332 coding upstream 92010 15150051 ~ 15155609 (+)
LOC103024643 NA coding upstream 98984 15144072 ~ 15148635 (+)
LOC103031502 eif4g2b,LOC108431851,LOC107730533,LOC107569652,LOC103379577 coding upstream 127314 15107363 ~ 15120305 (+)
LOC103031823 LOC108263962,LOC107740339,LOC107583811 coding upstream 417275 14818068 ~ 14830344 (+)
nts nts coding upstream 509892 14731792 ~ 14737727 (+)
nrip3 nrip3 coding downstream 49570 15298945 ~ 15304011 (+)
LOC103021723 LOC108426425 coding downstream 71895 15321270 ~ 15331330 (+)
LOC111194727 NA coding downstream 84498 15333873 ~ 15335002 (+)
LOC103046975 NA coding downstream 93119 15342494 ~ 15347109 (+)
chtf8 chtf8,LOC107583916,LOC107569647 coding downstream 123974 15373349 ~ 15376164 (+)
LOC107197619 NA non-coding upstream 33626 15203184 ~ 15213993 (+)
G158429 NA non-coding upstream 105147 15142172 ~ 15142472 (+)
G158419 NA non-coding upstream 122625 15124789 ~ 15124994 (+)
G158417 NA non-coding upstream 123950 15123138 ~ 15123669 (+)
G158381 NA non-coding upstream 177210 15069786 ~ 15070409 (+)
G158467 wee1,LOC108264466,LOC107686254,LOC107580369,LOC107758614,LOC107740329,LOC107583885 non-coding downstream 28248 15277623 ~ 15280021 (+)
G158472 znf143,znf143b,LOC107672322,LOC107583804 non-coding downstream 35529 15284904 ~ 15290727 (+)
G158461 znf143,znf143b non-coding downstream 42066 15291441 ~ 15295392 (+)
G158475 NA non-coding downstream 55434 15304809 ~ 15305463 (+)
G158477 NA non-coding downstream 66582 15315957 ~ 15319685 (+)
LOC111194769 NA other upstream 110349 15128368 ~ 15137270 (+)
G158369 NA other upstream 196901 15050222 ~ 15050718 (+)
LOC103042073 LOC103042073,LOC108418727 other upstream 1267594 13973821 ~ 13980025 (+)
LOC107197649 LOC108416831 other upstream 1505119 13733945 ~ 13742500 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other upstream 2506617 12735519 ~ 12741002 (+)
c18h11orf16 NA other downstream 56837 15306212 ~ 15315552 (+)
LOC103041858 NA other downstream 518680 15768055 ~ 15768661 (+)
LOC107197617 NA other downstream 521920 15771295 ~ 15771945 (+)
LOC103041352 NA other downstream 526049 15775424 ~ 15776166 (+)
G158779 NA other downstream 1129884 16379259 ~ 16379823 (+)

Expression


Co-expression Network