CI01000012_09789066_09792437 (LRIT1A)


Basic Information

Item Value
gene id CI01000012_09789066_09792437
gene name LRIT1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9787695 ~ 9792437 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_09789066_09792437.mRNA
ATGTCTCTTACTGTCTTTTTGGGTCTCCTACTGGCATCTGGTGGCTTTCCACTTGTTCGGAGCACCTGTCCTTCCCAGTGCAGCTGCTTTTATCATAACCTGAGTGATGGTTCCAGAGCCAGGAGCGTGATTTGCAACGATCCAGAGATTTCCCTGGTGCCCGCCACGTTCCCAGAGGACACCTCGAAACTTCGGATTGAAAAGACTGCCATAAAGAGGATCCCGAGCGAGGCTTTTAGCTACCTCTCTAATTTAGAATTCCTTTGGATGTCTTTTAACGTTTTATCCTCTCTCAACTCGGACAGTTTCCGTGGCTTGTACAGTTTAGAGGAACTAAGGTTAGACGGAAATTCGCTCACTTCTTTTCCGTGGGAATCCCTCATGGACATGCCCAGTCTGAGGCTACTCGATATACACAACAACCAGCTGTCCTCAGTACCCTCTGAGGCTGCTCTCTATATGAAAAATTTAACCTACCTGGATCTATCCAGTAATAATCTGCTGACAGTGCCACCTGAGGTGCTCAACACTTGGTTGACGGTCAAACCCGTCCAGGGAGTAGAAAGTTCAAAAATGATTCTTGGTCTCCATGACAACCCATGGTTGTGTGATTGTCGTTTATACGACCTGGTCCAGTTCCAGAAGTCTCCCACTCAGTCAGTGGCCTTCATTGACACAAGGCTCAGGTGCGCTGATCCAGAGAGCCTCTCTGGAGTTCTATTTAGTGATGCCGAGCTCAGACGGTGCCAGGGCCCTCGTGTCCACACAGCTGTAGCCCGTGTGAGGAGCGCAGTGGGCAACAATGTCTTGTTGAGATGCGGAACCATTGGTGTTCCCATCCCTGAGCTGGCCTGGAGAAGGGCAGATAGAAAACCACTGAATGGGACAGTTCAACTGGAGAATTCAAAGGAGGGAATAGTGTGGTCTATTTTAAGCGTGCCTGCCGTGTCCTATCGTGACACGGGAAAGTACATCTGCAAAGCCACAAATTATGCAGGGAGTGCAGAGGCCGTCATTTCTTTGATCATAAGCGATGGACCCAAAGCAGAGAATCCAACTGTGGATCCAAAAACCAAAGTGAAGTCTAAGAAGCCAAACCCTATAGTCAAGGCAGCCTATCAAGAAAAACACATTGTCACATATGTTTCCCCAACACCCAACAATGTGCTACCACTTGGTGCCACAGTTAGCTACACAGGCCCGTATCCAGGTATGCAGAGCGACAATGCTGCTAACAGTCGGACAAATACCCAAACAGCCAGTCCCGACGGGTTCCTGGAGACCAATCTGAGCAACCTGGCTGCAAACACGTCCTCACTTCAGCAAGACCCTGACAGGGTTGTGCGCTCTGTGAAAGTGATTGGCGATACGGATTACACTGTGTGTCTGAACTGGAGGGCACCGACTGCAAAGAACACAACCGCTTTTAGCGTCCTCTACGCTGTGTTTGGGGAGAGGGATATGCGCAGAATTAACGTCAGTCCAGGTAACAACCGGATCCTCATCGAGGGACTGGTTCCAAAAACCAAATACATCGCCTGTGTGTGCGTCAAGGGGCTGATCCCCAAAAAGGAGCAGTGTGTAATCTTCTCAACAGATGCAGCTGCTAGCGCTAATGGAACCCAAAAGCTCATTAATGTAGTAGTAATCACGGTTGCCTGTGTGATAGCTGTGCCTCTGACTGTGATAGTGTGCTGCGGGGCACTTAAGAGGAAAATCAAGAAGTTTCTGGGCAAAAAGTCCAAAGATATTCAAGACTCATATGTGACGTTTGAAACTCTGTCTCCCAGTACCAAGGCTAAAGGCTTGGAGGGGGAATATCTCACCAGACTGAACGCAGAGGAGTCCAACAGACTGCTGTCGGCCAGGTCCAGCCTAGACTCTGAGTCCACCGCCAAAATTGAGGGACAGCCGAATGAATACTTCTGCTGACAATATCCCTCAGCCACAATTCCGCCACGCAGCCTCCAGAGTATCCAGGCCCAGCCGCAGTACCTGAGTGCACACAATCTGTACCAGCAGTACATGACTGGCCGTCCGTGAAGAAGATTCAGGATACTTTGCATAAGTAACAAAGTGCACAAGTGAGGATCTTTATGTTGTCTTGGTAATGTTGCTCTTTGTTACTGTGCTTTTGGATTGGTTAGAAACTAACCATTTGGCTGGTGGTGGGGTTGTGGCTGAGCAATCCCAGGAACATGTTTTCATGGACTTTTAACCCTTTAGATAGTGCTGGAATGAACTGATTCAAAGGGAAATGTTCATATGAATTCTTGTATATTTATGTATATGGGGAAAAAATCTATTTATATGTGATATATATAGTAATAAGGAATTGGGGATTCATTTCCATTTTTGCAGTGATGCCATAGAAGAATAATTTTTGGTTCTCTTAAGAATATTACAGTGAACAGTTCTTTTTTTAAAAACTTTTTTTTTCTTGTGTACAACATTTTAAAAATATAAAGAACCTTTTCCACTATAAAGATCCTTTTGTGGAATAGAAAGGTTCCATAGATGTTAAAGGTTCTTCATGGAACCATTTATTCAAATAAAGAACCTTTATTTATTATTTAGGCCCCGTTTACACTAGTGCGTTTTTGTTTTAAAACGGCGTTTTAAAATGAAAACGATCCTCATCTACACTGGCGTTTCCACAGCGTTTCAGAAACGATCTCCGTCTACACTACACGGCCGAAAATTCATGTCACATGACCGTTCAAGCACACTGGGCATGCGCGTACAAGTGTAAACAATTGCTTCTTGCGCACGTAGGATGCTGAAGTATTAAAAAAATGCACAGTTTATCTGCACAATGGCTGCTAAAAATTACAACAAAGCCAGCAAAGATTGCATTCCAGTCGCCATGTTATTGTTTACACGGTCGTCAAGGATACGCAAAGCGAATGTGGGCAGCCACGCCATCGTTTTCAAAAGTCTCCGTTTTGGTCTGTTTATACTGAAACGCAACCCCGGCGTTTTCAAACTAAAACGGGCTCTGGGTACGAAAACACCGGCGTAGTGTAAACGACAGGTGTAACCGCAGCAAAAGTTACGCGTTTTAAAATGAAAACGCACTAGTGTAAACGGGGCCTTAGAGTGTAGTTACTTTTCTAACAGAATGAAGAGTCTAGTGTAACACATGCAAAATCATAAAAATCATTTGGGATTTTCATATGCTCCAACATAGTCATCATTGTGTATGTGATATTACTTCTGTTTAAATGTAAAACTTGTGCTACCTGAACCATTCAGAACTTTTTTTTTTGTCCCAGGTTTCACCCATTTATGCTTCAAAATAAA

Function

symbol description
lrit1a Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human LRIT1 (leucine rich repeat, Ig-like and transmembrane domains 1).

NR:

description
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_09789066_09792437.mRNA True 3303 mRNA 0.45 4 9787695 9792437

Neighbor

gene id symbol gene type direction distance location
CI01000012_09782840_09786910 LRIT2 coding downstream 785 9782610 ~ 9786910 (-)
CI01000012_09754856_09756772 CHST3A coding downstream 30739 9754595 ~ 9756956 (-)
CI01000012_09589749_09615649 PAX2A, PAX2 coding downstream 172046 9588444 ~ 9615649 (-)
CI01000012_09513757_09517777 CUEDC2 coding downstream 269918 9513268 ~ 9517777 (-)
CI01000012_09465977_09473475 DNAJB12A coding downstream 314220 9465948 ~ 9473475 (-)
CI01000012_09830411_09851586 OGDHL coding upstream 37728 9830165 ~ 9851870 (-)
CI01000012_09862141_09892366 PARGA, PARG coding upstream 69438 9861875 ~ 9892366 (-)
CI01000012_09894361_09922003 MYOFL coding upstream 101219 9893656 ~ 9922443 (-)
CI01000012_09926268_09941904 UNC5B coding upstream 133636 9926073 ~ 9942394 (-)
CI01000012_09974294_09974754 NA coding upstream 180902 9973339 ~ 9975056 (-)
G75189 NA non-coding downstream 18186 9766445 ~ 9769509 (-)
G75004 NA non-coding downstream 145751 9641710 ~ 9641944 (-)
G75001 NA non-coding downstream 148046 9639446 ~ 9639649 (-)
G74997 NA non-coding downstream 150551 9636905 ~ 9637144 (-)
G74996 NA non-coding downstream 151297 9636147 ~ 9636398 (-)
G75212 NA non-coding upstream 23541 9815978 ~ 9817036 (-)
G75230 NA non-coding upstream 194928 9987365 ~ 9987685 (-)
G75645 NA non-coding upstream 293514 10085951 ~ 10086261 (-)
G75646 NA non-coding upstream 293838 10086275 ~ 10086512 (-)
G75647 NA non-coding upstream 296619 10089056 ~ 10089273 (-)
G74982 NA other downstream 211723 9575648 ~ 9576149 (-)
CI01000012_09400481_09401810 EIF4EBP2 other downstream 385727 9398076 ~ 9402378 (-)
CI01000012_09082056_09083285 NA other downstream 704206 9081877 ~ 9083489 (-)
CI01000012_09071892_09073410 NA other downstream 714238 9071371 ~ 9073457 (-)
CI01000012_09068458_09070536 NA other downstream 717028 9067906 ~ 9070765 (-)
G75608 NA other upstream 819478 10611915 ~ 10620871 (-)
CI01000012_12047175_12052116 NA other upstream 2256607 12046728 ~ 12052541 (-)
CI01000012_12079581_12084139 NA other upstream 2286499 12078936 ~ 12084260 (-)
CI01000012_12954694_12954954 SF3B5, BRAFLDRAFT_284483 other upstream 3162009 12954446 ~ 12957833 (-)
G77287 NA other upstream 3826839 13619276 ~ 13633819 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006050 lrit1a coding NC_007124.7 CM002897.2 29462249 ~ 29467558 (+)
bowfin (Amia calva) AMCG00002946 LOC108442250 coding CM030139.1 CM030139.1 7412109 ~ 7425081 (+)