c18h11orf16


Basic Information

Item Value
gene id c18h11orf16
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15306212 ~ 15315552 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU214824
CtttgcacaaaataaaaatattgagcCATATTTTGTATTACCTGATGTattctttaaaatacttttaaaatactgaTTATAAAAAAAGTCCAGTgcattaaatatacatacaaaaacacattaaggCACATTTAAAGGATAATAAAGAGCTTACACAGCTGTGGTCAATCTCAATGCAATTTTAGTGCAATCAGTGCTTTATATAGACTGGCTAGTCACTTCACTTTTCAGACATGTTGATCTGGAATGAAGTGGTGCTAAACCCTGATGATAATCAAGAGGTCAGAGATCAAATGTGAGACTCTTGCTCTCCCCTGCACTGATGTGGACGACTCTTGTCTGTGGACTTGCATCCTGCATTGCTGCTGTGACGGAATAAGTGCCTGGAGACACTTCAATCAGGAAATCCTCAGGTTCAGAAAGACCAGTGTACTGAGCTTTCCTGAAGGTCGAATTTGTTGGCCGGTGTTGACCTGAAGGCGACTGCTGAGAGTGAAAACGGCACACATGGCTTTTCTCCTGCTCGCTGACCTTTGCTGCGCTTGAAGATTTGTAAAAATTCTTGCACTGATGGGTAGTTTCTGACATGTGCTGCACTATTCTGGAAAAAGCACGGTCCAGATCCAAGCCTTCATGGACACAGAGCTCCTCCTGAACCTCAGCGTGTTTCTCTTTGGCATTGTGCTTCCGGTTGGGCCGTCTCACACTTGGCCAGTCTACAGACCGTCTTTTGGCTCTTTCCAACACCTCAAGCCCAAGTTTGGATGAGCGCTGCAGTGAAGACTCCAACCAGGACTGCCCTGACATGGATGCAGTCCGCCTCATCGCCACAGCTTTAACGGCACTAATATCCTGCAGAAATCCGCCCTGGTGTTATCTCTGAGCTCTGTGAAGTGTTATAGTCTTCCCGACTCTGTTTAAATTGAACCATGACGGTAAATAAAAGACTGGGCGTGGGAAATGTGAAAGTGAAGGGTGAAGCGTGTCTCTTCCTCCCCGAGTGctgctgggaaatgtagtttttttcccttcatttttttttactacgcTAAAATGAA
>XM_007249221.3
AACTCCCATACACAACAAGAGTGCTGTGGACTGCACTGGGAGAGATATGAGCACACTGGGGAATTTATAAAGaaaaaggATGGACAGCAGCCGAGGTGTCATCCCTGTGCTCATGGGGAAAGACAGGAACGTCACCCTCATACTGGACACTTCTGAGGCTATGACCGCTGTTCTGGGAACAGTGAAGAACCTGATTGTTCAAACTCTACTCGCCAAAGCTTCACTCAGGAACTCCCTTTTTAACATCATCACGTTTTCATATAAGGTAACACCATGGTCTGATCACATGGTCCCTTGTGCCCCTGATACAGTGTATGAAGCCCTGGGCTGGATCCACACGCTCACGACCAGCCCTGGAAAGGATCTCCTGACAGCACTTACCACCGCATTCTCTGATCCTGCTTGTCAGTCTGTCCACCTTGTGACCAACAGTCTCCCAGACAACCCAGAGAATTGTCTAAGTGCACTGTCTACCTGTGGGACACGTCCAGTGCACACTTTTCACATTGCTGAAAAACAGGCCTTGGACAGTGACACGCTGGATTTTCTGAAGTGCTTGACTTCTGCTACTAGAGGAAGCTGTTATAGGCTCAATCTGAACTCAGGCAGCACAGCAGAGCAGGTAGCTTTGCTGCACTCAGCAGAACACCAGATTCAAGAACCATCATTCTCAGAGAATAGATGCTGCCGGGCCTTACATTACAACCCCATGCATGCAGTCTGTCTTTCCCCATACTGGGGTTCTCTTAGAAATCCCTTTAGTGCAACGCCTTGTATTTCAGCAAGGTTGATGAGAGGGGCAGAGTTCTATCCAGGCTGCCGAGTGTTAGCTAGAAGAGAGGCAGATGGATTTTACTACTTGGGGACAATTGTACACCAGCTTCAGGATAGAGGAGGGTTTTTTATGGTGGCATTTGATAAGCCAGGGTACAGGGTGGATAGCACCTCAGAACTGGCACTGCCCCAGCCAACATGCCAACCAGATATGATCAATATAACTCAGGGATATGGACACAGTATTGTACCTGGAGACACAGTGTTAGCTCCCTTTGAGCAGGAGATGAGCAGGTACGGGCCTGGCAGGATCGTTTCAGGAATGGAGCTAAGAGACCCACTGAGAGGTGGAGCAGGGAATGGGCTTTTGGTTCTCTTTTGGAATGGATTCAGAACACATGTGCCCAATAACCTGGCTGTGTGGATACCAGCCTCTCACTACGAGCGAATCATCAGGGAATTCCAGTCTCATGCACTTTTCAGATCATCCTGCTGCTTAAACCACACTTACTGTAATCAAATAAACTGGACACCAGCCTGCTGCATGCATCAGTGTCTCTCAGCAGCTTCTGCCTTGTGCCATTGTCCAATCAACAGCTGCCTTCCCCAGACCTCATCTTTTCTCAGGAGCAACCAAGAGAATGAGAAGGTGGAAATTAATGCTGACCAACAGAAGGAACTGCAGGGTTCTCAGGAAACACAGATACCATCCCCTTCACCATCATCTTCAAGTGAGGATGAAGAGGAAAAATTAGAAGTCACAGAGTCTGAGCTGGTGAGCCGCTCAGTAAACACTGATATATCATGCCTAAAAAAGGCCTACACTGAGTCACAGAGTAAACCAGCCTGGAGATATTGGAGGAGAGGAGCTGCGGAGGCACACCACAAacaaccagGAATAGAGGCCAGATCTCTAAATGTAAGCTATTCTTGGCCTGGAAAACCATCCAGCCACACAGAGTGTCCCTCCTCCTCCATTTCTACAGTAACAAATAACAGCTCGGTGTTTGACCTAGTTCCTGTTTCAGCAAGAAGAGGTGTTACAGTCAGAGAGATATTTGGCTGGACTGAACAACCAGCTTCTAAAGGTGTATCTCCACTGGCTTTTGCACTGAGAAAGATTTCAgttaaacaaaattttaattaatgccACACTGTTCTGAAtaaaatcaaaaggaaaaaaatgtgcATGCTAATGTTTAGCTATACACTTTGAAGAGAATACATGTGCAACAAATCCCAGCAAATACTGAtgtgatataaaaataatgtgtttatttcagCACCATTTATAAGTTAGgctgattaaaaacaaacatgcaGTAATTGCtttgcacaaaataaaaatattgagcCATA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107740346

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214824 False 1058 lncRNA 0.44 5 15312020 15315552
XM_007249221.3 True 2133 mRNA 0.46 8 15306212 15312049

Neighbor

gene id symbol gene type direction distance location
nrip3 nrip3 coding upstream 2201 15298945 ~ 15304011 (+)
rnf141 rnf141,LOC107672299,LOC107740332 coding upstream 150603 15150051 ~ 15155609 (+)
LOC103024643 NA coding upstream 157577 15144072 ~ 15148635 (+)
LOC103031502 eif4g2b,LOC108431851,LOC107730533,LOC107569652,LOC103379577 coding upstream 185907 15107363 ~ 15120305 (+)
LOC103031823 LOC108263962,LOC107740339,LOC107583811 coding upstream 475868 14818068 ~ 14830344 (+)
LOC103021723 LOC108426425 coding downstream 5718 15321270 ~ 15331330 (+)
LOC111194727 NA coding downstream 18321 15333873 ~ 15335002 (+)
LOC103046975 NA coding downstream 26942 15342494 ~ 15347109 (+)
chtf8 chtf8,LOC107583916,LOC107569647 coding downstream 57797 15373349 ~ 15376164 (+)
LOC103031192 LOC108423591,LOC105018602,LOC103466747,LOC108229128 coding downstream 166892 15482444 ~ 15501213 (+)
G158475 NA non-coding upstream 749 15304809 ~ 15305463 (+)
G158461 znf143,znf143b non-coding upstream 10820 15291441 ~ 15295392 (+)
G158472 znf143,znf143b,LOC107672322,LOC107583804 non-coding upstream 15485 15284904 ~ 15290727 (+)
G158467 wee1,LOC108264466,LOC107686254,LOC107580369,LOC107758614,LOC107740329,LOC107583885 non-coding upstream 26191 15277623 ~ 15280021 (+)
G158449 NA non-coding upstream 56837 15247619 ~ 15249375 (+)
G158477 NA non-coding downstream 405 15315957 ~ 15319685 (+)
G158486 tbc1d15,LOC107686258,LOC107672302,LOC107749074,LOC107579928 non-coding downstream 48205 15363757 ~ 15367122 (+)
G158555 NA non-coding downstream 76107 15391659 ~ 15393165 (+)
G158565 zc3h18,LOC107672267 non-coding downstream 136664 15452216 ~ 15461006 (+)
G158576 NA non-coding downstream 187974 15503526 ~ 15504044 (+)
LOC111194769 NA other upstream 168942 15128368 ~ 15137270 (+)
G158369 NA other upstream 255494 15050222 ~ 15050718 (+)
LOC103042073 LOC103042073,LOC108418727 other upstream 1326187 13973821 ~ 13980025 (+)
LOC107197649 LOC108416831 other upstream 1563712 13733945 ~ 13742500 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other upstream 2565210 12735519 ~ 12741002 (+)
LOC103041858 NA other downstream 452503 15768055 ~ 15768661 (+)
LOC107197617 NA other downstream 455743 15771295 ~ 15771945 (+)
LOC103041352 NA other downstream 459872 15775424 ~ 15776166 (+)
G158779 NA other downstream 1063707 16379259 ~ 16379823 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other downstream 1227326 16542878 ~ 16571458 (+)

Expression


Co-expression Network