G158555


Basic Information

Item Value
gene id G158555
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15391659 ~ 15393165 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU214935
TCACTGCATGAAACCCACTCATCACAATTCAATTCATGAAACAAATCCAGACCCGATGTTCCTATATAAAAGTTCAAAACCAAGCATTTTTCCATCTTTCCATCTTCTATCAGATTAGGAAAGACAGTAAACAGACATGTGAAGTGCAGCCATGGAAAGTTCCAGCACCATGCAGAAGGAGTAGGACTCCTCTACAAGGAGTAACAAATTGCCCTGCCTTGTCTTACAATGTTTTCAGCAATATCATAACCCTGCTTTTTCTATATGTAGCACAAACAGTGAGGAGGGAAAAAGGCAAACAGGCACTATTTTACTGCCGCTGAGTAGAATGCTGACTTGCGGTGTGTGCAGAGGGAGACAAATATTGCAATTGCCGCACTTTGCTTTGCTCAGCCTGCGCTGTGTCCTGTGTGTCCTCAGATAAATAGCTAATTGTTGGTTTCTCAGGTCTTGATGAGAACtccttttttcctgTGGTGACAATTTTGAGCAAAATGTTCTTCAGGGTCTTCTCTTTACAGAAAAGTGGGTTCACGTTTATGAGAACTGTTATGTAACTGTTAATGAGAATGAGGTTATTTGTCAAGACTCATGGTAGAACCACAATCTTCTTTTCCAGTTTCTGCTGGGGGAAGATGAACTTCCTCATGACATCATCCAGCTCCTCCAGGGCCAGCTGAGCATGGAGCACCGCCACCTCATCAGCGTCGGAGCGCACCACCCACTTCAAAGCCCGATAGAGTTCCAGCAGAACATCTCCCAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214935 True 765 lncRNA 0.44 2 15391659 15393165

Neighbor

gene id symbol gene type direction distance location
chtf8 chtf8,LOC107583916,LOC107569647 coding upstream 15495 15373349 ~ 15376164 (+)
LOC103046975 NA coding upstream 44550 15342494 ~ 15347109 (+)
LOC111194727 NA coding upstream 56657 15333873 ~ 15335002 (+)
LOC103021723 LOC108426425 coding upstream 60329 15321270 ~ 15331330 (+)
nrip3 nrip3 coding upstream 87648 15298945 ~ 15304011 (+)
LOC103031192 LOC108423591,LOC105018602,LOC103466747,LOC108229128 coding downstream 89279 15482444 ~ 15501213 (+)
LOC103043506 LOC108423614 coding downstream 285558 15678723 ~ 15688714 (+)
kiaa0513 kiaa0513,LOC107740318,LOC107583795 coding downstream 298338 15691503 ~ 15717211 (+)
c18h16orf70 c4h16orf70,clg19h16orf70,si:dkey-102f14.5,LOC103042166,LOC107686270,LOC106573725,LOC105892482 coding downstream 344823 15737988 ~ 15750462 (+)
nup93 nup93,LOC107549634 coding downstream 384560 15777725 ~ 15804576 (+)
G158486 tbc1d15,LOC107686258,LOC107672302,LOC107749074,LOC107579928 non-coding upstream 24537 15363757 ~ 15367122 (+)
G158477 NA non-coding upstream 71974 15315957 ~ 15319685 (+)
G158475 NA non-coding upstream 86196 15304809 ~ 15305463 (+)
G158461 znf143,znf143b non-coding upstream 96267 15291441 ~ 15295392 (+)
G158472 znf143,znf143b,LOC107672322,LOC107583804 non-coding upstream 100932 15284904 ~ 15290727 (+)
G158565 zc3h18,LOC107672267 non-coding downstream 59051 15452216 ~ 15461006 (+)
G158576 NA non-coding downstream 110361 15503526 ~ 15504044 (+)
G158580 NA non-coding downstream 178369 15571534 ~ 15572338 (+)
G158582 NA non-coding downstream 190276 15583441 ~ 15584994 (+)
G158624 NA non-coding downstream 379061 15772226 ~ 15772440 (+)
c18h11orf16 NA other upstream 76107 15306212 ~ 15315552 (+)
LOC111194769 NA other upstream 254389 15128368 ~ 15137270 (+)
G158369 NA other upstream 340941 15050222 ~ 15050718 (+)
LOC103042073 LOC103042073,LOC108418727 other upstream 1411634 13973821 ~ 13980025 (+)
LOC107197649 LOC108416831 other upstream 1649159 13733945 ~ 13742500 (+)
LOC103041858 NA other downstream 374890 15768055 ~ 15768661 (+)
LOC107197617 NA other downstream 378130 15771295 ~ 15771945 (+)
LOC103041352 NA other downstream 382259 15775424 ~ 15776166 (+)
G158779 NA other downstream 986094 16379259 ~ 16379823 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other downstream 1149713 16542878 ~ 16571458 (+)

Expression


Co-expression Network