G158576


Basic Information

Item Value
gene id G158576
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15503526 ~ 15504044 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU214962
TGTCAGATAGGATGTTTCCTGATGTTTCTGTTTTGATACTTTGATTCTGCAtctgcatttctgcatttcCTATTTTTGATTTAGATTTAATAAATCCAAACCCATCAACAACCCCCTTATTTTTCAGCATCATATTTCtaaatgatcattttttaaaaactaataacatTTTCTCTGTGGATttttaattgaatatgaaaataataaaaggatACACAGCTTCAGGAAGCTTATTAGCTGAAGTGAAATTGTCGTGGctattgaaaagaaaaaaggcagTATGGACGGCGATGGTGTCCTTGGCATGTTGCAGTGTGAAGGTGCTTGCAGTGgctttttctgattttaatctGCTTGATATTCGCTCAGCTCGTAATGGTGGTCTGAAATCAGAGCTTGGTGTCTGTGAGTGTTCTGTGAGCATGTGCTGTTCTGCCGGTATTTCCTTTGAgaaggacaaaataaataaagaaaagaactacatttgtgttttctttttttctctttctgtttgatATG

Function

GO:

id name namespace
GO:0005102 signaling receptor binding molecular_function
GO:0071855 neuropeptide receptor binding molecular_function
GO:0031841 neuropeptide Y receptor binding molecular_function
GO:0031843 type 2 neuropeptide Y receptor binding molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU214962 True 519 lncRNA 0.35 1 15503526 15504044

Neighbor

gene id symbol gene type direction distance location
LOC103031192 LOC108423591,LOC105018602,LOC103466747,LOC108229128 coding upstream 2313 15482444 ~ 15501213 (+)
chtf8 chtf8,LOC107583916,LOC107569647 coding upstream 127362 15373349 ~ 15376164 (+)
LOC103046975 NA coding upstream 156417 15342494 ~ 15347109 (+)
LOC111194727 NA coding upstream 168524 15333873 ~ 15335002 (+)
LOC103021723 LOC108426425 coding upstream 172196 15321270 ~ 15331330 (+)
LOC103043506 LOC108423614 coding downstream 174679 15678723 ~ 15688714 (+)
kiaa0513 kiaa0513,LOC107740318,LOC107583795 coding downstream 187459 15691503 ~ 15717211 (+)
c18h16orf70 c4h16orf70,clg19h16orf70,si:dkey-102f14.5,LOC103042166,LOC107686270,LOC106573725,LOC105892482 coding downstream 233944 15737988 ~ 15750462 (+)
nup93 nup93,LOC107549634 coding downstream 273681 15777725 ~ 15804576 (+)
slc12a3 slc12a3,LOC107583876 coding downstream 304145 15808189 ~ 15822339 (+)
G158565 zc3h18,LOC107672267 non-coding upstream 42520 15452216 ~ 15461006 (+)
G158555 NA non-coding upstream 110361 15391659 ~ 15393165 (+)
G158486 tbc1d15,LOC107686258,LOC107672302,LOC107749074,LOC107579928 non-coding upstream 136404 15363757 ~ 15367122 (+)
G158477 NA non-coding upstream 183841 15315957 ~ 15319685 (+)
G158475 NA non-coding upstream 198063 15304809 ~ 15305463 (+)
G158580 NA non-coding downstream 67490 15571534 ~ 15572338 (+)
G158582 NA non-coding downstream 79397 15583441 ~ 15584994 (+)
G158624 NA non-coding downstream 268182 15772226 ~ 15772440 (+)
G158627 NA non-coding downstream 303275 15807319 ~ 15807533 (+)
G158640 NA non-coding downstream 403109 15907153 ~ 15907900 (+)
c18h11orf16 NA other upstream 187974 15306212 ~ 15315552 (+)
LOC111194769 NA other upstream 366256 15128368 ~ 15137270 (+)
G158369 NA other upstream 452808 15050222 ~ 15050718 (+)
LOC103042073 LOC103042073,LOC108418727 other upstream 1523501 13973821 ~ 13980025 (+)
LOC107197649 LOC108416831 other upstream 1761026 13733945 ~ 13742500 (+)
LOC103041858 NA other downstream 264011 15768055 ~ 15768661 (+)
LOC107197617 NA other downstream 267251 15771295 ~ 15771945 (+)
LOC103041352 NA other downstream 271380 15775424 ~ 15776166 (+)
G158779 NA other downstream 875215 16379259 ~ 16379823 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other downstream 1038834 16542878 ~ 16571458 (+)

Expression


Co-expression Network