G158580


Basic Information

Item Value
gene id G158580
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15571534 ~ 15572338 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU214966
cgcgggattaaaagaagcaatttttttgcggagcggtaacgagacagaaacgcgggagcgtggaagagtgggtttaaaaatcagtctcgcgcagacctctattatacatgataaaaaaaaatgcaggctcttcgaaactgatttatataataaaacgtaaggggtaatgtggcaacagtaggggctaaatcggttacaaaagcctggcctacaaaaatgatgtctgaacgaatttcctcttatctaatataatttaaaatggtttaaaaatataaaataatttctaagcaaacgaaatatttaatattgagcttatagcccaagtgcaaaaatacaaaatcagtaatacggctatgccctgcaacaatccttaaaccgaaatagaccaagtacaataacgtcattaacaatgactttcctctactctaatataatttaacatggtttaaaaatataaaataatttctaaacaaacgaaatatttaatattgagcttatagcccaagtgcaaaaatacaaaatcagtaatatgccctgcacaatcctttaaccgaaatagaccaagtacagtttacaatgactgtcctctaatataatcaacaatgtttaagaatataaaatacttcctgaacaaacgtttttttttttgtttgtttttttaagcaaatagcctaagtgtgaaaacacaaacagcaatttactgggctggcttgcgcagcggagaaaccgtgcagcagcagcctcctagcctgcttacgcagcggataagccgcggtgtagggcagcagaaattccgggatgaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214966 True 805 lncRNA 0.36 1 15571534 15572338

Neighbor

gene id symbol gene type direction distance location
LOC103031192 LOC108423591,LOC105018602,LOC103466747,LOC108229128 coding upstream 70321 15482444 ~ 15501213 (+)
chtf8 chtf8,LOC107583916,LOC107569647 coding upstream 195370 15373349 ~ 15376164 (+)
LOC103046975 NA coding upstream 224425 15342494 ~ 15347109 (+)
LOC111194727 NA coding upstream 236532 15333873 ~ 15335002 (+)
LOC103021723 LOC108426425 coding upstream 240204 15321270 ~ 15331330 (+)
LOC103043506 LOC108423614 coding downstream 106385 15678723 ~ 15688714 (+)
kiaa0513 kiaa0513,LOC107740318,LOC107583795 coding downstream 119165 15691503 ~ 15717211 (+)
c18h16orf70 c4h16orf70,clg19h16orf70,si:dkey-102f14.5,LOC103042166,LOC107686270,LOC106573725,LOC105892482 coding downstream 165650 15737988 ~ 15750462 (+)
nup93 nup93,LOC107549634 coding downstream 205387 15777725 ~ 15804576 (+)
slc12a3 slc12a3,LOC107583876 coding downstream 235851 15808189 ~ 15822339 (+)
G158576 NA non-coding upstream 67490 15503526 ~ 15504044 (+)
G158565 zc3h18,LOC107672267 non-coding upstream 110528 15452216 ~ 15461006 (+)
G158555 NA non-coding upstream 178369 15391659 ~ 15393165 (+)
G158486 tbc1d15,LOC107686258,LOC107672302,LOC107749074,LOC107579928 non-coding upstream 204412 15363757 ~ 15367122 (+)
G158477 NA non-coding upstream 251849 15315957 ~ 15319685 (+)
G158582 NA non-coding downstream 11103 15583441 ~ 15584994 (+)
G158624 NA non-coding downstream 199888 15772226 ~ 15772440 (+)
G158627 NA non-coding downstream 234981 15807319 ~ 15807533 (+)
G158640 NA non-coding downstream 334815 15907153 ~ 15907900 (+)
G158641 NA non-coding downstream 336665 15909003 ~ 15909291 (+)
c18h11orf16 NA other upstream 255982 15306212 ~ 15315552 (+)
LOC111194769 NA other upstream 434264 15128368 ~ 15137270 (+)
G158369 NA other upstream 520816 15050222 ~ 15050718 (+)
LOC103042073 LOC103042073,LOC108418727 other upstream 1591509 13973821 ~ 13980025 (+)
LOC107197649 LOC108416831 other upstream 1829034 13733945 ~ 13742500 (+)
LOC103041858 NA other downstream 195717 15768055 ~ 15768661 (+)
LOC107197617 NA other downstream 198957 15771295 ~ 15771945 (+)
LOC103041352 NA other downstream 203086 15775424 ~ 15776166 (+)
G158779 NA other downstream 806921 16379259 ~ 16379823 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other downstream 970540 16542878 ~ 16571458 (+)

Expression


Co-expression Network