LOC103041352


Basic Information

Item Value
gene id LOC103041352
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15775424 ~ 15776166 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU215023
CTATAAATTCACTGCATTCATTCACCAAATACATTCAGCCTTCCCTCAGGATAGAGCTTCTTTTGAAAGATATCCAAGCCTGAAACGAACACATTTGAAGAGAAAATGGATCCCTGTGACTGCGCCAAGACTGGAAGCTGCAGCTGTGGTACAAGCTGCAAATGCACAAACTGCCAGTGTACATCCTGCAAGAAAAgTTGCTGTCCATGCTGTCCATCTGGCTGCAGCAAGTGTGCTTCTGGCTGTGTATGCAAGGGAAATGCTTGTGGCTCCAGTTGCTGCCAGTGAAGAAAGGACTGTTACTGCCAATCAGGATGTACATATTGTATTGCCTTTTGTACTCTGTAGCTTCTAAATAAGTAATGTCTTTTTAAGGGAAATGccaataaataacactgctgtatCTGAGT
>XM_007249200.3
CATTCACCAAATACATTCAGCCTTCCCTCAGGATAGAGCTTCTTTTGAAAGATATCCAAGCCTGAAACGAACACATTTGAAGAGAAAATGGATCCCTGTGACTGCGCCAAGACTGGAAGCTGCAGCTGTGGTACAAGCTGCAAATGCACAAACTGCCAGTGTACATCCTGCAAGAAAAgTTGCTGTCCATGCTGTCCATCTGGCTGCAGCAAGTGTGCTTCTGGCTGTGTATGCAAGGGAAATGCTTGTGGCTCCAGTTGCTGCCAGTGAAGAAAGGACTGTTACTGCCAATCAGGATGTACATATTGTATTGCCTTTTGTACTCTGTAGCTTCTAAATAAGTAATGTCTTTTTAAGGGAAATGccaataaataacactgctgtatCTGAGTCTTttgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215023 True 410 lncRNA 0.43 3 15775424 15776158
XM_007249200.3 False 400 mRNA 0.44 3 15775442 15776166

Neighbor

gene id symbol gene type direction distance location
c18h16orf70 c4h16orf70,clg19h16orf70,si:dkey-102f14.5,LOC103042166,LOC107686270,LOC106573725,LOC105892482 coding upstream 24962 15737988 ~ 15750462 (+)
kiaa0513 kiaa0513,LOC107740318,LOC107583795 coding upstream 58213 15691503 ~ 15717211 (+)
LOC103043506 LOC108423614 coding upstream 86710 15678723 ~ 15688714 (+)
LOC103031192 LOC108423591,LOC105018602,LOC103466747,LOC108229128 coding upstream 274211 15482444 ~ 15501213 (+)
chtf8 chtf8,LOC107583916,LOC107569647 coding upstream 399260 15373349 ~ 15376164 (+)
nup93 nup93,LOC107549634 coding downstream 1559 15777725 ~ 15804576 (+)
slc12a3 slc12a3,LOC107583876 coding downstream 32023 15808189 ~ 15822339 (+)
herpud1 NA coding downstream 47553 15823719 ~ 15833040 (+)
cetp cetp coding downstream 56987 15833153 ~ 15846690 (+)
nlrc5 NA coding downstream 75690 15851856 ~ 15875235 (+)
G158624 NA non-coding upstream 2984 15772226 ~ 15772440 (+)
G158582 NA non-coding upstream 190430 15583441 ~ 15584994 (+)
G158580 NA non-coding upstream 203086 15571534 ~ 15572338 (+)
G158576 NA non-coding upstream 271380 15503526 ~ 15504044 (+)
G158565 zc3h18,LOC107672267 non-coding upstream 314418 15452216 ~ 15461006 (+)
G158627 NA non-coding downstream 31153 15807319 ~ 15807533 (+)
G158640 NA non-coding downstream 130987 15907153 ~ 15907900 (+)
G158641 NA non-coding downstream 132837 15909003 ~ 15909291 (+)
G158644 fam192a non-coding downstream 159912 15936078 ~ 15942262 (+)
LOC111194770 NA non-coding downstream 193120 15969286 ~ 15986748 (+)
LOC107197617 NA other upstream 3479 15771295 ~ 15771945 (+)
LOC103041858 NA other upstream 6763 15768055 ~ 15768661 (+)
c18h11orf16 NA other upstream 459872 15306212 ~ 15315552 (+)
LOC111194769 NA other upstream 638154 15128368 ~ 15137270 (+)
G158369 NA other upstream 724706 15050222 ~ 15050718 (+)
G158779 NA other downstream 603093 16379259 ~ 16379823 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other downstream 766712 16542878 ~ 16571458 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other downstream 877970 16654136 ~ 16725209 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other downstream 1003340 16779506 ~ 16798400 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other downstream 1325446 17101612 ~ 17172228 (+)

Expression


Co-expression Network