LOC103041858


Basic Information

Item Value
gene id LOC103041858
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15768055 ~ 15768661 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU215025
ACATTCAGCTCTTACTCTCAACAGCAGCTTCTTTCCAGAGACTTCTAGAACTGAAACAAACACCTCTGACAAAAAATGGATCCCTGTGAATGTGCCAAGACTGGAAGCTGCAGCTGTGGTTCAGGCTGCAAATGCAAGAACTGCCAGTGTAAATCCTGCAAGAAAAGCTGCTGCTCATGCTGTCCATCTGGCTGCAGCAAGTGTGCTTCTGGATGTGTGTGCAAGGGTAATACCTGTGACTCCAGCTGCTGCAAGTGAAGACAGGACTGATACTACCACTCAGAATGTACGTTTTGTTTTATATCACCATTGTAGTTCCTATCCTCTAAtgaattgtgtatttttaatgtaaatgtcaATAAAATAACTTAGCT
>XM_007249202.3
CATTCATGAAACACATTCAGCTCTTACTCTCAACAGCAGCTTCTTTCCAGAGACTTCTAGAACTGAAACAAACACCTCTGACAAAAAATGGATCCCTGTGAATGTGCCAAGACTGGAAGCTGCAGCTGTGGTTCAGGCTGCAAATGCAAGAACTGCCAGTGTAAATCCTGCAAGAAAAGCTGCTGCTCATGCTGTCCATCTGGCTGCAGCAAGTGTGCTTCTGGATGTGTGTGCAAGGGTAATACCTGTGACTCCAGCTGCTGCAAGTGAAGACAGGACTGATACTACCACTCAGAATGTACGTTTTGTTTTATATCACCATTGTAGTTCCTATCCTCTAAtgaattgtgtatttttaatgtaaatgtcaATAAAATAACTTAGCTGTA

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU215025 False 374 lncRNA 0.43 3 15768067 15768658
XM_007249202.3 True 389 mRNA 0.42 3 15768055 15768661

Neighbor

gene id symbol gene type direction distance location
c18h16orf70 c4h16orf70,clg19h16orf70,si:dkey-102f14.5,LOC103042166,LOC107686270,LOC106573725,LOC105892482 coding upstream 17593 15737988 ~ 15750462 (+)
kiaa0513 kiaa0513,LOC107740318,LOC107583795 coding upstream 50844 15691503 ~ 15717211 (+)
LOC103043506 LOC108423614 coding upstream 79341 15678723 ~ 15688714 (+)
LOC103031192 LOC108423591,LOC105018602,LOC103466747,LOC108229128 coding upstream 266842 15482444 ~ 15501213 (+)
chtf8 chtf8,LOC107583916,LOC107569647 coding upstream 391891 15373349 ~ 15376164 (+)
nup93 nup93,LOC107549634 coding downstream 9064 15777725 ~ 15804576 (+)
slc12a3 slc12a3,LOC107583876 coding downstream 39528 15808189 ~ 15822339 (+)
herpud1 NA coding downstream 55058 15823719 ~ 15833040 (+)
cetp cetp coding downstream 64492 15833153 ~ 15846690 (+)
nlrc5 NA coding downstream 83195 15851856 ~ 15875235 (+)
G158582 NA non-coding upstream 183061 15583441 ~ 15584994 (+)
G158580 NA non-coding upstream 195717 15571534 ~ 15572338 (+)
G158576 NA non-coding upstream 264011 15503526 ~ 15504044 (+)
G158565 zc3h18,LOC107672267 non-coding upstream 307049 15452216 ~ 15461006 (+)
G158555 NA non-coding upstream 374890 15391659 ~ 15393165 (+)
G158624 NA non-coding downstream 3565 15772226 ~ 15772440 (+)
G158627 NA non-coding downstream 38658 15807319 ~ 15807533 (+)
G158640 NA non-coding downstream 138492 15907153 ~ 15907900 (+)
G158641 NA non-coding downstream 140342 15909003 ~ 15909291 (+)
G158644 fam192a non-coding downstream 167417 15936078 ~ 15942262 (+)
c18h11orf16 NA other upstream 452503 15306212 ~ 15315552 (+)
LOC111194769 NA other upstream 630785 15128368 ~ 15137270 (+)
G158369 NA other upstream 717337 15050222 ~ 15050718 (+)
LOC103042073 LOC103042073,LOC108418727 other upstream 1788030 13973821 ~ 13980025 (+)
LOC107197649 LOC108416831 other upstream 2025555 13733945 ~ 13742500 (+)
LOC107197617 NA other downstream 2634 15771295 ~ 15771945 (+)
LOC103041352 NA other downstream 6763 15775424 ~ 15776166 (+)
G158779 NA other downstream 610598 16379259 ~ 16379823 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other downstream 774217 16542878 ~ 16571458 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other downstream 885475 16654136 ~ 16725209 (+)

Expression


Co-expression Network