G158624


Basic Information

Item Value
gene id G158624
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15772226 ~ 15772440 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU215026
gcacACAATGGTCtattaattgtttgttttgtattgtctGACTTGCActcaatgaaaatccaaaaatcccAGAAACTCTTAcatcacttcatgctttcctctacTGATCTCTTGTACTgagatttcatattttttagcCAGGCTTGGTACACTGCCAAAAAGACTTGTGAACTTATACTTTGCAACAGAAATTCAAGTCCAAACAAATCTTTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215026 True 215 lncRNA 0.35 1 15772226 15772440

Neighbor

gene id symbol gene type direction distance location
c18h16orf70 c4h16orf70,clg19h16orf70,si:dkey-102f14.5,LOC103042166,LOC107686270,LOC106573725,LOC105892482 coding upstream 21764 15737988 ~ 15750462 (+)
kiaa0513 kiaa0513,LOC107740318,LOC107583795 coding upstream 55015 15691503 ~ 15717211 (+)
LOC103043506 LOC108423614 coding upstream 83512 15678723 ~ 15688714 (+)
LOC103031192 LOC108423591,LOC105018602,LOC103466747,LOC108229128 coding upstream 271013 15482444 ~ 15501213 (+)
chtf8 chtf8,LOC107583916,LOC107569647 coding upstream 396062 15373349 ~ 15376164 (+)
nup93 nup93,LOC107549634 coding downstream 5285 15777725 ~ 15804576 (+)
slc12a3 slc12a3,LOC107583876 coding downstream 35749 15808189 ~ 15822339 (+)
herpud1 NA coding downstream 51279 15823719 ~ 15833040 (+)
cetp cetp coding downstream 60713 15833153 ~ 15846690 (+)
nlrc5 NA coding downstream 79416 15851856 ~ 15875235 (+)
G158582 NA non-coding upstream 187232 15583441 ~ 15584994 (+)
G158580 NA non-coding upstream 199888 15571534 ~ 15572338 (+)
G158576 NA non-coding upstream 268182 15503526 ~ 15504044 (+)
G158565 zc3h18,LOC107672267 non-coding upstream 311220 15452216 ~ 15461006 (+)
G158555 NA non-coding upstream 379061 15391659 ~ 15393165 (+)
G158627 NA non-coding downstream 34879 15807319 ~ 15807533 (+)
G158640 NA non-coding downstream 134713 15907153 ~ 15907900 (+)
G158641 NA non-coding downstream 136563 15909003 ~ 15909291 (+)
G158644 fam192a non-coding downstream 163638 15936078 ~ 15942262 (+)
LOC111194770 NA non-coding downstream 196846 15969286 ~ 15986748 (+)
LOC107197617 NA other upstream 281 15771295 ~ 15771945 (+)
LOC103041858 NA other upstream 3565 15768055 ~ 15768661 (+)
c18h11orf16 NA other upstream 456674 15306212 ~ 15315552 (+)
LOC111194769 NA other upstream 634956 15128368 ~ 15137270 (+)
G158369 NA other upstream 721508 15050222 ~ 15050718 (+)
LOC103041352 NA other downstream 2984 15775424 ~ 15776166 (+)
G158779 NA other downstream 606819 16379259 ~ 16379823 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other downstream 770438 16542878 ~ 16571458 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other downstream 881696 16654136 ~ 16725209 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other downstream 1007066 16779506 ~ 16798400 (+)

Expression


Co-expression Network