G158640


Basic Information

Item Value
gene id G158640
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15907153 ~ 15907900 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU215045
tGGCCTTTTTtctcacctcctcgacctgagcatgaacctgaattcagaccagctgtttgctctccACTCTCCACAAAAGATgttccacatatgagctgctaacacatccattcccctttttaaagctttaaAAGTATTGACTGAAAGACTCCTCCTAACTGTAGTGACAGTGAACGACTGAGCAGCCTCTGAGTCAGTGTTCACGACACCTGCTCGCGCCTCCCTCCCTGAGAGTTTCCTCAGGCGCTTTTATTGGCTGTTGCTTCTTGCTGTCCTTACTACTTGTTGTTCATGTACTCGCACAACACAATTGCTGAGAATTTCAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215045 True 329 lncRNA 0.46 2 15907153 15907900

Neighbor

gene id symbol gene type direction distance location
nlrc5 NA coding upstream 31918 15851856 ~ 15875235 (+)
cetp cetp coding upstream 60463 15833153 ~ 15846690 (+)
herpud1 NA coding upstream 74113 15823719 ~ 15833040 (+)
slc12a3 slc12a3,LOC107583876 coding upstream 84814 15808189 ~ 15822339 (+)
nup93 nup93,LOC107549634 coding upstream 102577 15777725 ~ 15804576 (+)
rspry1 rspry1,LOC107583786,LOC107672266 coding downstream 39686 15947586 ~ 15959406 (+)
LOC103038143 NA coding downstream 52249 15960149 ~ 15968090 (+)
LOC111194834 NA coding downstream 328280 16236180 ~ 16236963 (+)
cbln1 cbln1,LOC107549644,LOC107583779 coding downstream 366779 16274679 ~ 16285044 (+)
LOC107197482 LOC102776007 coding downstream 598996 16506896 ~ 16511309 (+)
G158627 NA non-coding upstream 99620 15807319 ~ 15807533 (+)
G158624 NA non-coding upstream 134713 15772226 ~ 15772440 (+)
G158582 NA non-coding upstream 322159 15583441 ~ 15584994 (+)
G158580 NA non-coding upstream 334815 15571534 ~ 15572338 (+)
G158576 NA non-coding upstream 403109 15503526 ~ 15504044 (+)
G158641 NA non-coding downstream 1103 15909003 ~ 15909291 (+)
G158644 fam192a non-coding downstream 28178 15936078 ~ 15942262 (+)
LOC111194770 NA non-coding downstream 61386 15969286 ~ 15986748 (+)
G158651 NA non-coding downstream 68952 15976852 ~ 15978946 (+)
G158652 NA non-coding downstream 71126 15979026 ~ 15979369 (+)
LOC103041352 NA other upstream 130987 15775424 ~ 15776166 (+)
LOC107197617 NA other upstream 135208 15771295 ~ 15771945 (+)
LOC103041858 NA other upstream 138492 15768055 ~ 15768661 (+)
c18h11orf16 NA other upstream 591601 15306212 ~ 15315552 (+)
LOC111194769 NA other upstream 769883 15128368 ~ 15137270 (+)
G158779 NA other downstream 471359 16379259 ~ 16379823 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other downstream 634978 16542878 ~ 16571458 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other downstream 746236 16654136 ~ 16725209 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other downstream 871606 16779506 ~ 16798400 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other downstream 1193712 17101612 ~ 17172228 (+)

Expression


Co-expression Network