CI01000012_09815706_09822346 (CHATA, CHAT)


Basic Information

Item Value
gene id CI01000012_09815706_09822346
gene name CHATA, CHAT
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9815706 ~ 9822671 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_09815706_09822346.mRNA
ATGAGGTGGGCTGGCAGATGCGGCATCGAGCGAATGGAGTTTAGTGGGAGGAGCCTAAGAAAGAGGGAACTGGGAAAAGTGTCAGTGAGTGGATTTTCATCTTTCTTCACTGAATTCTATAACTTTGAGGATGCCGGTTTTGAAAAGGGAACAAGCAAGAGACACGGGAGATCCAAGTTGCCCCCTTTGCAGCAAACACTGGACATGTACCTGAAGTGCATGAGTCACCTCATACCAGAGGAGCAGTTCAGAAAGACAAAGGCTATTGTAGAGAAATTTGGAGTACCTGGTGGAATGGGAGAATTTCTTCAGAAAAAGTTACTGGAGAGAAGCGATCTTAAGGCCAATTGGGTGTATGACTACTGGCTCGAAGACATGTATTTGAGCAACAGATTAGCACTACCTGTCAACTCCAGTCCTGTTATGGTCTTTCCTAAGCAGAACTTCAGGTGTCAAAGTGATGTCCTCAGATTTGCTGCCCATCTCATTTCTGGCATATTAGAGTATAAATCTCTTATTGATGGGCGTGCCCTCCCTGTAGACTACGCTCGAGGGCAGCTGGCCGGGACGCCCCTGTGTATGGATCAGTACAACAAGGTCTTCACCTCCTACCGTCTGCCGGGGCCAAAAACCGACACTTTAGTGGCTCAGAAGAGCACAGTTATGCCTGAGCCCGAACATATAATAGTGGCTTGTAAGAATCAGTTTTTTGTTCTCGATGTGGTGATAAACTTTCGTCGACTGAATGAAAAAGACCTTTACACTCAGCTGGAGCGAATCAGAAAGATGGCAGACATTGAAGAGGAGTGTCTGCCTCCTATCGGTCTGCTCACATCAGATGGCAGAACTCAGTGGGCCGAGGCTCGCAGCGTACTTATCAAAGATTCTACCAACAGGGACTCTCTAGACATGATTGAACGCTGTCTGTGTCTGGTGTGTTTGGACGAGCCGTCTGGCATTGAACTGACTGATACCAATCGAGCTTCACTGATGCTCCACGGAGGGGGCATGGAAAAAAATGGGGGCAACCGCTGGTACGACAAGCCCATGCAGTTTGTGATAGGTGCAGACGGATGCTGCGGTGTTGTATGTGAACACTCCCCTTTTGAGGGAATAGTGCTGGTGCAATGTACAGAGTATCTACTGAGATACATGAGAGGAAGCCCTTCTAAACTGGTGAGAGCGGCCAGCATGAGTGAGCTTCCTGCCCCCAGACGACTGCGCTGGAAATGCTCATCAGATATCCAAAAGCTCCTCATGGCCTCAGAAGATAAATTACAGAGACTTGTGAAAAATCTGGATATGAATGTCAGCAAATTCACTGGTTATGGCAAAGAGTTCATCAAGAGACAGAAAATGAGCCCTGATGCTTATGTTCAAGTTGCCCTCCAGTTTGCATTTTACAGATGTCACGGACGTCTAGTGCCCACCTATGAAAGTGCATCAATACGCCGCTTTCAAGAGGGACGAGTTGACAACATTCGCTCTTCCACACCTGAGGCCTTTGCATTTGTGAAAGCTATGGCCAACAGCTCCAAAATCACTGATGCTGAGAAAATGGAGATGCTTTGGACTGCCATTAAAGCCCAAACCAATTATACAATTCTAGCAATCACTGGGATGGCAATAGACAATCACTTGTTGGGGCTGCGAGAGATTGCCAAGGAGCTAAAACTCGAAAAGCCAGAGCTGTTTTCTGATACAACCTATACCACCAGCATCCAGTTCATTCTATCTACAAGCCAGGTTCCTACCACTGAGGAGATGTTCTGCTGCTATGGTCCTGTTGTCCCTAACGGCTACGGAGCCTGCTACAATCCTCAGACGGACCACATCATCTTCTGTGTGTCAAGCTTCCGTGACAGTGCTGAGACCAGCTCAGATTTGTTTGTGAAGACTCTTGAGGGATGCCTGAAGGAAATGCAAGATCTATGCCAAAAATGCAACACTGAAGCTAAACCAGCTGATTCCACAGAAGGGATGGAGGGAACTCCCAAGGTAATGAAGAATGGAAGCAAGTCATAGCAAAAAGCTAAAATGTTTAAATCGCATGGAAGATGCAGGAAGAAACCAATGTGACTGTACAAAGAGTAAACATTTCAGGAGAAAATCATAGTCTCAAAAATATAGCAAGGATCATGGACTGATTTAGTGAATACATTTGATATGCAAAAGAATTGAAGTAGGCATTCCCCTTAGGTATTTCCTCTATATTACAGATATAGAGAAGTGATATACAGATTATAACAGAAGTGGCATAGAGATTCTATGGAGCTGCAGTCGCTTGACAATAGTACTAAGTAGATCTATTTAGGTGTTTTGCAATATTTGGCCTATGAGAGCATACAGA

Function

symbol description
chata Predicted to enable choline O-acetyltransferase activity. Involved in locomotory behavior. Predicted to be active in cytoplasm and neuron projection. Is expressed in brain; neurons; post-vent region; and spinal cord. Used to study congenital myasthenic syndrome. Human ortholog(s) of this gene implicated in Alzheimer's disease and congenital myasthenic syndrome 6. Orthologous to human CHAT (choline O-acetyltransferase).
chat Predicted to enable choline O-acetyltransferase activity. Predicted to be involved in acetylcholine biosynthetic process and neuromuscular synaptic transmission. Predicted to act upstream of or within several processes, including adult walking behavior; establishment of synaptic specificity at neuromuscular junction; and rhythmic excitation. Predicted to be located in axon and neuronal cell body. Predicted to be active in cytoplasm and neuron projection. Implicated in Alzheimer's disease and congenital myasthenic syndrome 6.

GO:

id name namespace
GO:0004102 choline O-acetyltransferase activity molecular_function

KEGG:

id description
K00623 CHAT; choline O-acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_09815706_09822346.mRNA True 2350 mRNA 0.46 15 9815706 9822671

Neighbor

gene id symbol gene type direction distance location
CI01000012_09812937_09814478 SLC18A3, SLC18A3A coding upstream 289 9812421 ~ 9815417 (+)
CI01000012_09796386_09801947 RGR, RGRA coding upstream 13162 9796291 ~ 9802544 (+)
CI01000012_09764936_09778598 CDHR1A coding upstream 36305 9764582 ~ 9779401 (+)
CI01000012_09503160_09508216 HIF1AN coding upstream 307330 9501951 ~ 9508376 (+)
CI01000012_09487818_09493571 WNT8B, WNT8B.S coding upstream 321460 9487818 ~ 9494246 (+)
CI01000012_09828421_09828926 NA coding downstream 5750 9828421 ~ 9829388 (+)
CI01000012_09977219_09983804 NA coding downstream 154340 9977011 ~ 9983866 (+)
CI01000012_10196272_10198737 HPS6 coding downstream 373601 10196272 ~ 10198816 (+)
CI01000012_10223957_10235955 NA coding downstream 401026 10223697 ~ 10236276 (+)
CI01000012_10244843_10249396 NA coding downstream 422172 10244843 ~ 10249499 (+)
G75055 NA non-coding upstream 73458 9741467 ~ 9742248 (+)
G74017 NA non-coding upstream 184899 9616330 ~ 9630807 (+)
G74014 NA non-coding upstream 199617 9612580 ~ 9616089 (+)
G74045 NA non-coding upstream 239699 9575594 ~ 9576007 (+)
G74040 NA non-coding upstream 260514 9554657 ~ 9555192 (+)
G75087 NA non-coding downstream 35619 9858290 ~ 9858518 (+)
G75089 NA non-coding downstream 37008 9859679 ~ 9859954 (+)
G75113 NA non-coding downstream 98702 9921373 ~ 9922152 (+)
G75115 NA non-coding downstream 108863 9931534 ~ 9931876 (+)
G75147 NA non-coding downstream 163441 9986112 ~ 9986370 (+)
G73578 NA other upstream 1448079 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 2007851 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 3891401 5922385 ~ 5929186 (+)
G71623 NA other upstream 3999101 5813517 ~ 5816605 (+)
G71548 NA other upstream 4254273 5550493 ~ 5561433 (+)
G75533 NA other downstream 1322146 11144817 ~ 11145739 (+)
G76385 NA other downstream 2808084 12630755 ~ 12675666 (+)
G76374 NA other downstream 2922860 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 3192835 13029435 ~ 13038899 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006674 chata coding NC_007124.7 CM002897.2 29406814 ~ 29421331 (-)