G158652


Basic Information

Item Value
gene id G158652
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15979026 ~ 15979369 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU215066
ttgttaatgacgttattgtacttggtctatttcggtttaaggattgtgcagggcatattactgattttgtatttttgcacttgggctataagatcaatattaaatattttgtttgcttagaaattattttatatttttaaaccattttaaattatattagataagaggaaatccgttcagacatcatttttgtaggccaggcttttgtaaccgatttagcccctactgttgccacattaccccttacgttttattatataaatcagttttgaagagtctgcatttttttttatcatgtataatagaggtctgcgcgagactgatttttaaacccactcttccac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215066 True 344 lncRNA 0.32 1 15979026 15979369

Neighbor

gene id symbol gene type direction distance location
LOC103038143 NA coding upstream 10936 15960149 ~ 15968090 (+)
rspry1 rspry1,LOC107583786,LOC107672266 coding upstream 19620 15947586 ~ 15959406 (+)
cpne2 cpne2,LOC107583787,LOC107740309 coding upstream 46560 15878898 ~ 15932466 (+)
nlrc5 NA coding upstream 103791 15851856 ~ 15875235 (+)
cetp cetp coding upstream 132336 15833153 ~ 15846690 (+)
LOC111194834 NA coding downstream 256811 16236180 ~ 16236963 (+)
cbln1 cbln1,LOC107549644,LOC107583779 coding downstream 295310 16274679 ~ 16285044 (+)
LOC107197482 LOC102776007 coding downstream 527527 16506896 ~ 16511309 (+)
n4bp1 NA coding downstream 532965 16512334 ~ 16530595 (+)
trnal-cag_11 NA coding downstream 784157 16763526 ~ 16763608 (+)
G158651 NA non-coding upstream 80 15976852 ~ 15978946 (+)
G158644 fam192a non-coding upstream 36764 15936078 ~ 15942262 (+)
G158641 NA non-coding upstream 69735 15909003 ~ 15909291 (+)
G158640 NA non-coding upstream 71126 15907153 ~ 15907900 (+)
G158627 NA non-coding upstream 171493 15807319 ~ 15807533 (+)
G158776 NA non-coding downstream 311407 16290776 ~ 16291007 (+)
G158786 lonp2 non-coding downstream 595315 16574684 ~ 16575374 (+)
G158793 NA non-coding downstream 608558 16587927 ~ 16588472 (+)
G158823 aars non-coding downstream 749087 16728456 ~ 16730115 (+)
G158818 NA non-coding downstream 759103 16738472 ~ 16738877 (+)
LOC103041352 NA other upstream 202860 15775424 ~ 15776166 (+)
LOC107197617 NA other upstream 207081 15771295 ~ 15771945 (+)
LOC103041858 NA other upstream 210365 15768055 ~ 15768661 (+)
c18h11orf16 NA other upstream 663474 15306212 ~ 15315552 (+)
LOC111194769 NA other upstream 841756 15128368 ~ 15137270 (+)
G158779 NA other downstream 399890 16379259 ~ 16379823 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other downstream 563509 16542878 ~ 16571458 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other downstream 674767 16654136 ~ 16725209 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other downstream 800137 16779506 ~ 16798400 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other downstream 1122243 17101612 ~ 17172228 (+)

Expression


Co-expression Network