CI01000012_09828421_09828926


Basic Information

Item Value
gene id CI01000012_09828421_09828926
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9828421 ~ 9829388 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_09828421_09828926.mRNA
ATGCCTACTAATTCAGTGGTAACAGTACGGTATGGTCCATATGAGTCGTGTGGTATTGTCGAGCACAGAACATTTCGACTGGATGGTTTACAAGCGGTCCTAAAAGAAGATGGCCACCAGTGTGTCCTCGAGAAAACGGATGACTGGAATATAGTAGAGCTCATTGTCAATGGAGAGTGCGTCTACACGTGCAACATTACTGACCTTGAGTTTGGGGGTGATGGACGACTTGATCCGCGGTGCCAGGAGGCCATTGACGCAGTGAGGAACGCGTATTGAACGCCATGTCATGTAGCTGTGGTCGAAATGGAACACTAGCATACTACGTACTGAATACTACGCAGTATACTTAAAAAAAAAAAAAGTGGCTATGAATGAAAAAGCTCACTACTTGCGCATTATAAATTGTGTACTTCATATTATGTTAGTAAATTGAACACTGTACAGTAGACCTATAGCCTACTATTTTTTAAATATTCCAAAAATAGCCATTGTATTTAAATCTAGTGAGCTAAGTAATTAGATTTTAGCATTTTTTGGCATGCATGTTATGAGTCCACTAATAGTGTCCTGCTGTAAAGGAAGGCAGCACTCTCACTGTGGAGAGACCTCTTAAATATGTGCACAGGTATATGATAAATGATAAAAACCTAGCAAACGTCCATCGTTTGTCATTGACTTACAGTTTATTGCATTATTGCTGAGAAACGTCTATCATTCATCACAATCTATCACAGTGAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_09828421_09828926.mRNA True 741 mRNA 0.40 3 9828421 9829388

Neighbor

gene id symbol gene type direction distance location
CI01000012_09815706_09822346 CHATA, CHAT coding upstream 5750 9815706 ~ 9822671 (+)
CI01000012_09812937_09814478 SLC18A3, SLC18A3A coding upstream 13004 9812421 ~ 9815417 (+)
CI01000012_09796386_09801947 RGR, RGRA coding upstream 25877 9796291 ~ 9802544 (+)
CI01000012_09764936_09778598 CDHR1A coding upstream 49020 9764582 ~ 9779401 (+)
CI01000012_09503160_09508216 HIF1AN coding upstream 320045 9501951 ~ 9508376 (+)
CI01000012_09977219_09983804 NA coding downstream 147623 9977011 ~ 9983866 (+)
CI01000012_10196272_10198737 HPS6 coding downstream 366884 10196272 ~ 10198816 (+)
CI01000012_10223957_10235955 NA coding downstream 394309 10223697 ~ 10236276 (+)
CI01000012_10244843_10249396 NA coding downstream 415455 10244843 ~ 10249499 (+)
CI01000012_10260457_10272063 NT5C2B, NT5C2, NT5C2A coding downstream 430347 10259735 ~ 10272262 (+)
G75055 NA non-coding upstream 86173 9741467 ~ 9742248 (+)
G74017 NA non-coding upstream 197614 9616330 ~ 9630807 (+)
G74014 NA non-coding upstream 212332 9612580 ~ 9616089 (+)
G74045 NA non-coding upstream 252414 9575594 ~ 9576007 (+)
G74040 NA non-coding upstream 273229 9554657 ~ 9555192 (+)
G75087 NA non-coding downstream 28902 9858290 ~ 9858518 (+)
G75089 NA non-coding downstream 30291 9859679 ~ 9859954 (+)
G75113 NA non-coding downstream 91985 9921373 ~ 9922152 (+)
G75115 NA non-coding downstream 102146 9931534 ~ 9931876 (+)
G75147 NA non-coding downstream 156724 9986112 ~ 9986370 (+)
G73578 NA other upstream 1460794 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 2020566 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 3904116 5922385 ~ 5929186 (+)
G71623 NA other upstream 4011816 5813517 ~ 5816605 (+)
G71548 NA other upstream 4266988 5550493 ~ 5561433 (+)
G75533 NA other downstream 1315429 11144817 ~ 11145739 (+)
G76385 NA other downstream 2801367 12630755 ~ 12675666 (+)
G76374 NA other downstream 2916143 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 3186118 13029435 ~ 13038899 (+)

Expression


Co-expression Network