G158776


Basic Information

Item Value
gene id G158776
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 16290776 ~ 16291007 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU215234
ATTTTTGTCTAATTTAGCCTGATTGAATTTTAATTGGAGTTTTGAGGAGCAGCACTAGTGTTGGTTGCTGTAACTGCAACAATGCAGGAGTGGGGTAATTATGACAGCTCTTAACTCAACGAGCCGCCCGCTGAATACAgattgatttaatttgatttgacaTCACTTGCAATACTTCCCCTCCCACCCTGATTCTGGTAAACTCACCCCCCTGCTGTGAAATTTATGGCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215234 True 232 lncRNA 0.42 1 16290776 16291007

Neighbor

gene id symbol gene type direction distance location
cbln1 cbln1,LOC107549644,LOC107583779 coding upstream 5732 16274679 ~ 16285044 (+)
LOC111194834 NA coding upstream 53813 16236180 ~ 16236963 (+)
LOC103038143 NA coding upstream 322686 15960149 ~ 15968090 (+)
rspry1 rspry1,LOC107583786,LOC107672266 coding upstream 331370 15947586 ~ 15959406 (+)
cpne2 cpne2,LOC107583787,LOC107740309 coding upstream 358310 15878898 ~ 15932466 (+)
LOC107197482 LOC102776007 coding downstream 215889 16506896 ~ 16511309 (+)
n4bp1 NA coding downstream 221327 16512334 ~ 16530595 (+)
trnal-cag_11 NA coding downstream 472519 16763526 ~ 16763608 (+)
pllp pllp coding downstream 473025 16764032 ~ 16773000 (+)
hacd3 hacd3,LOC107738726,LOC107686290,LOC107672296,LOC107596982,LOC107583769,LOC107742880 coding downstream 551654 16842661 ~ 16852459 (+)
LOC111194770 NA non-coding upstream 304028 15969286 ~ 15986748 (+)
G158652 NA non-coding upstream 311407 15979026 ~ 15979369 (+)
G158651 NA non-coding upstream 311830 15976852 ~ 15978946 (+)
G158644 fam192a non-coding upstream 348514 15936078 ~ 15942262 (+)
G158641 NA non-coding upstream 381485 15909003 ~ 15909291 (+)
G158786 lonp2 non-coding downstream 283677 16574684 ~ 16575374 (+)
G158793 NA non-coding downstream 296920 16587927 ~ 16588472 (+)
G158823 aars non-coding downstream 437449 16728456 ~ 16730115 (+)
G158818 NA non-coding downstream 447465 16738472 ~ 16738877 (+)
G158837 arl2bp,LOC107549653,LOC107686354,LOC107672193 non-coding downstream 483673 16774680 ~ 16777218 (+)
LOC103041352 NA other upstream 514610 15775424 ~ 15776166 (+)
LOC107197617 NA other upstream 518831 15771295 ~ 15771945 (+)
LOC103041858 NA other upstream 522115 15768055 ~ 15768661 (+)
c18h11orf16 NA other upstream 975224 15306212 ~ 15315552 (+)
LOC111194769 NA other upstream 1153506 15128368 ~ 15137270 (+)
G158779 NA other downstream 88252 16379259 ~ 16379823 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other downstream 251871 16542878 ~ 16571458 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other downstream 363129 16654136 ~ 16725209 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other downstream 488499 16779506 ~ 16798400 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other downstream 810605 17101612 ~ 17172228 (+)

Expression


Co-expression Network