G158786 (lonp2)


Basic Information

Item Value
gene id G158786
gene name lonp2
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 16574684 ~ 16575374 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU215250
AGAagaatgaattaaaaatgatacacagtttgaaaaaaaaaaaatgcatcttaTTCCCTCTTGGTTAAATTAGCAGACAATCTTTTACGGTCATCATTAATATGCAGCTCCACtataaatcaaaaataaaggTACTGTTAACAGTAATTACAGTTGTTAATATCAAACTAATGTCAGCTAGTGACATTctcaaaaccaaaaataaacattattcacagtgtttttctattaaagaaaaaaatgaagaaaacaaagGAAACTCTGAATTAAGTGCTAAGTTTTCAGTGTTGGAACAACTAATTACAAGACATCTCCATAGGCTGATTATTTTAGTGTTCTGAAAGAGGAACATGAAGGCCTGTCTCGttaccgtgtgtgtgtgtgtgtgtgtgtttttgtgtatgtgAGCCCTGCAGTCTCTCAGAGTTTGCTGGTAATCTGTGGGTGAGTCAGGGAGAGAGCAGGGAATCCTCCATCAAAGGCAGCATTGAGAACGTCATCTAAAGTGCCGGCCGTAACAAAGTCCAGTTCAGCCCGTATGTGTCCCGGGATCTCCTCCAGGTCCTTCTCATTGCGCTTGGGGAGAATGATCCGCTTGAGACCTGCCCGGTGAGCCGCCAGGACTTTATCCTTAATGCCTCCcacctaaaaacac

Function

symbol description
lonp2 Predicted to enable ATP binding activity and peptidase activity. Predicted to be involved in protein processing and protein targeting to peroxisome. Predicted to act upstream of or within protein quality control for misfolded or incompletely synthesized proteins. Predicted to be located in peroxisome. Predicted to be active in peroxisomal matrix. Orthologous to human LONP2 (lon peptidase 2, peroxisomal).

NR:

description
PREDICTED: lon protease homolog 2, peroxisomal

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215250 True 655 lncRNA 0.40 2 16574684 16575374

Neighbor

gene id symbol gene type direction distance location
n4bp1 NA coding upstream 44089 16512334 ~ 16530595 (+)
LOC107197482 LOC102776007 coding upstream 63375 16506896 ~ 16511309 (+)
cbln1 cbln1,LOC107549644,LOC107583779 coding upstream 289640 16274679 ~ 16285044 (+)
LOC111194834 NA coding upstream 337721 16236180 ~ 16236963 (+)
LOC103038143 NA coding upstream 606594 15960149 ~ 15968090 (+)
trnal-cag_11 NA coding downstream 188152 16763526 ~ 16763608 (+)
pllp pllp coding downstream 188658 16764032 ~ 16773000 (+)
hacd3 hacd3,LOC107738726,LOC107686290,LOC107672296,LOC107596982,LOC107583769,LOC107742880 coding downstream 267287 16842661 ~ 16852459 (+)
slc24a1 slc24a1,LOC107738725,LOC107596980,LOC107742879,LOC107686291 coding downstream 284518 16859892 ~ 16884155 (+)
rab11a rab11a,LOC105007892,LOC106591986,LOC100698633,LOC106588008,LOC103378951,LOC106562755 coding downstream 345995 16921369 ~ 16931362 (+)
G158776 NA non-coding upstream 283677 16290776 ~ 16291007 (+)
LOC111194770 NA non-coding upstream 587936 15969286 ~ 15986748 (+)
G158652 NA non-coding upstream 595315 15979026 ~ 15979369 (+)
G158651 NA non-coding upstream 595738 15976852 ~ 15978946 (+)
G158644 fam192a non-coding upstream 632422 15936078 ~ 15942262 (+)
G158793 NA non-coding downstream 12553 16587927 ~ 16588472 (+)
G158823 aars non-coding downstream 153082 16728456 ~ 16730115 (+)
G158818 NA non-coding downstream 163098 16738472 ~ 16738877 (+)
G158837 arl2bp,LOC107549653,LOC107686354,LOC107672193 non-coding downstream 199306 16774680 ~ 16777218 (+)
LOC111194771 NA non-coding downstream 241861 16817235 ~ 16821091 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other upstream 3226 16542878 ~ 16571458 (+)
G158779 NA other upstream 194861 16379259 ~ 16379823 (+)
LOC103041352 NA other upstream 798518 15775424 ~ 15776166 (+)
LOC107197617 NA other upstream 802739 15771295 ~ 15771945 (+)
LOC103041858 NA other upstream 806023 15768055 ~ 15768661 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other downstream 78762 16654136 ~ 16725209 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other downstream 204132 16779506 ~ 16798400 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other downstream 526238 17101612 ~ 17172228 (+)
zwilch zwilch other downstream 602301 17177675 ~ 17189251 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other downstream 751726 17327100 ~ 17372206 (+)

Expression


Co-expression Network