G158793


Basic Information

Item Value
gene id G158793
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 16587927 ~ 16588472 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU215262
tttccaGTCAGTGGATATTAATGAAATCAATAGATTCAAATCTTTCTGAGTGAGACATTTATCAAATGTGCCTTATAGATTCAGTAAGACCTGAAGGAAGACACCACAAATTCTTCAATTATAGTTAGAACATGGGCAAACTGGATTTTACACTGTATTATTCTTTAAAAAGCTAAGAATCTTGGGTTCATCTAAGTGGGTCAGCCCTCCATCAACCTCCCCTGGGCTGTAGAAGAAGAGAAGAGCCCCTGAAGAGAACAGCCTGTGTTGATGAGACACACCCATACCTGTCTCAGACTCGCTCGATGATTCTGTTTTTGACAACTTGTGACCTTCTGCCACCTTCACAGCCACAGCTCGACAGATGGCCCCGATCTTCCTCTCTAGAGAACGCACACCGGCCTCCCGAGTGTacctacacaacacacaatacacaacacacacacagactcagtTTGTTTTGCTACTCTCACTGCTGAATTAGGGAAGGC

Function

GO: NA

KEGG:

id description
ko00240 Pyrimidine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU215262 True 491 lncRNA 0.44 2 16587927 16588472

Neighbor

gene id symbol gene type direction distance location
n4bp1 NA coding upstream 57332 16512334 ~ 16530595 (+)
LOC107197482 LOC102776007 coding upstream 76618 16506896 ~ 16511309 (+)
cbln1 cbln1,LOC107549644,LOC107583779 coding upstream 302883 16274679 ~ 16285044 (+)
LOC111194834 NA coding upstream 350964 16236180 ~ 16236963 (+)
LOC103038143 NA coding upstream 619837 15960149 ~ 15968090 (+)
trnal-cag_11 NA coding downstream 175054 16763526 ~ 16763608 (+)
pllp pllp coding downstream 175560 16764032 ~ 16773000 (+)
hacd3 hacd3,LOC107738726,LOC107686290,LOC107672296,LOC107596982,LOC107583769,LOC107742880 coding downstream 254189 16842661 ~ 16852459 (+)
slc24a1 slc24a1,LOC107738725,LOC107596980,LOC107742879,LOC107686291 coding downstream 271420 16859892 ~ 16884155 (+)
rab11a rab11a,LOC105007892,LOC106591986,LOC100698633,LOC106588008,LOC103378951,LOC106562755 coding downstream 332897 16921369 ~ 16931362 (+)
G158786 lonp2 non-coding upstream 12553 16574684 ~ 16575374 (+)
G158776 NA non-coding upstream 296920 16290776 ~ 16291007 (+)
LOC111194770 NA non-coding upstream 601179 15969286 ~ 15986748 (+)
G158652 NA non-coding upstream 608558 15979026 ~ 15979369 (+)
G158651 NA non-coding upstream 608981 15976852 ~ 15978946 (+)
G158823 aars non-coding downstream 139984 16728456 ~ 16730115 (+)
G158818 NA non-coding downstream 150000 16738472 ~ 16738877 (+)
G158837 arl2bp,LOC107549653,LOC107686354,LOC107672193 non-coding downstream 186208 16774680 ~ 16777218 (+)
LOC111194771 NA non-coding downstream 228763 16817235 ~ 16821091 (+)
G158852 ppcdc,LOC107738727,LOC107686355,LOC107583771 non-coding downstream 248241 16836713 ~ 16840357 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other upstream 16469 16542878 ~ 16571458 (+)
G158779 NA other upstream 208104 16379259 ~ 16379823 (+)
LOC103041352 NA other upstream 811761 15775424 ~ 15776166 (+)
LOC107197617 NA other upstream 815982 15771295 ~ 15771945 (+)
LOC103041858 NA other upstream 819266 15768055 ~ 15768661 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other downstream 65664 16654136 ~ 16725209 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other downstream 191034 16779506 ~ 16798400 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other downstream 513140 17101612 ~ 17172228 (+)
zwilch zwilch other downstream 589203 17177675 ~ 17189251 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other downstream 738628 17327100 ~ 17372206 (+)

Expression


Co-expression Network