st3gal2 (st3gal2,LOC107686287,LOC106573711)


Basic Information

Item Value
gene id st3gal2
gene name st3gal2,LOC107686287,LOC106573711
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 16654136 ~ 16725209 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU215287
TCGGGGGTGCTGTGAAAGCAGTGCTGTCTGAGAGATTCAGGGACTATTTTCTCCACGTTGAATTAGCTAGAGGccgacacacacatatacacacatatacacatacacacacttagcCTTAGCTTGTCAGAGCTGCAAAACAGACAGGACAGCACATTCCCATCACATCTGGACAGGGCGAGCAGGACCAGGCTGGACATGAAACCTCGCCTACCAGCTGAGGATCCATGTGAagaatattattattcatatgGCAGCAGCTGAGTCTTTCTTTATCTGCCGCTTCAGACTGGAGGACTGGAGCGATTCAGGACTGatgggagaggaggaggagcaggggCTGTGATTTCCAGGCTGAgcccagcagcagctcaaagcTGTGTTTGAAGAAAcgagaagaaggaggagaagaagagttTTGCATCCCAGACACGAAGGATCTTCCACTGTGAGTGACCAAAGACCAGCAGCATCTAGTCTTGTAATCATCTGATCTGGCTGAACAGAGTGATTGGACTGGAGAGGCTCTATAACAGAGTGGACCCTTTGGAACACATACATCACACacgctcaacacacacacacacactcctctgtgAGGATTTCGTTAATATTGCGCTTCACATTAGGCGTGTCCTCCCCTCCTTAAAGCTTGTGCAACTCTCATCCATCACTGCTGAGCACTGTGCCTTCAGGACCAGGGTGAAATCCCTCCCACCCTGTCCTCTCACCTCTTCCCTTTTCATTCACTTGCAAGAAACCCATCATGGCCGTACAAATCTAACCTCTGTTGATTCTTCATTCACAATCCATATCTGAGGAGAAAGAAGTATAGTTGGGATGTATGGTGAGATCAAAGAACCTGTGAGATGTTGGGAAGACTAAACTGCAGTCCATCACCAAAGAATCCCATTATCTATACCTTTTAATTTGATACCTTCTTATTAATCTGGTTTTATAAAGATAAACAACTTTACTAGTATGAAAAAAAgacaagggaaaaaaaatcttgtttttgaGAGTGCAAAGAAGATCCAAATACACAGATTGtcaaaaaaatagttgcacctcGATAGAATAGACCAATAGGAAGCAAACTGGTGAGTAGTTGTGCCAGTTATGACAGCATAAAGTGACTCCGAATGTGGAGGTACTGTGATCAGTTCTATGATCAATGGTTTGCTGTCACTCATCCAGATAGCCTGGGGTCTTGATGTTGGATGCAATTTCGTACAATACCAGTTCTGCTTTGGTCACAATTAGGCACCTTGACAGTccaatttaacattaaaaaggtCCTGCAACAAATGGCTCTACTTTTCTCATTGCACACTCTGCTATGcattttcaacaggacaatgctcatccacatacagCTGCTGtgtcaagagcttgccttggcCAGCATCATTACATGCGAGGACGTCTGGCACGTCACactacacatgcattacaccctacttctgtatgtgtagattaaaaaatatgacCCAGGATGCTCATATCCATCTACATTTATAAATCacttattgttcctggtaatctTTATCTTAATTccaaatagcattgcaatcaaGCACGTcctttctgggtgcaactatttcttTGACAATTAGTGTAAAAAGCGAGGAGAACCAAAATGGTGTTTTtcctctaaaaaaaatgtaataaagcagggctgctgtgattgggTGACAAGGCTGGAACACAGTCCATTTCACCAATGGCACATCAAAATCACTTTGACCCGTCTTTAAGTACTGACGTCCACCTGCACTGTTGGTGATATTCCTATCTCACGCTTTAATATTCTTCACATCAGGGGCCTACAGATCTGTGCCTGACTCCTTCCAAGAGGGGAAAAgcacttttctctctttcctttttatcGACAGGGTTGCAGTAGGCCAGTAGTTTGGAAGGTTAATGGAAGCATGACTGATGTTTTCACTTATGGATCGTTGGGATTTGGTTGAGGGAAAAGCTCTGACCGATTCCACCACCCACATCTTTGACACAGAGGGCCTCTCTTTCAGCTCTAGAGGTCCACAAGCAAACCAGTTATCCACCGACAACACAGACTGTACATATTCTCCTGGTATTTTACTGCGCTTCTAAACAAAACTCCTCCTCATTAGTGGTGTAGTGACCATCGATGGGTCAGTGctctttttccttcattttccaATTTCAATCTCTGTGTGTAATTATGGACTGTTTTTATCTTATGCTATTGTaagaaataaatgcaaattttaaaaaa
>XM_007249175.3
agggtGGGCAATCAGCAGTGGAAGTTTGACACTGTTAGTGTGAACAACAGaccacagaaagagagagcactgcTACCTGCCCCCAAgctgtttgtgtgcgtgtgtgtgactGCTGGCTCCAAGGGCACGGTGGCAGGGGCCGGTGCATGGCAGTGGGGGGGCAGAGCGGCGTCCGCTCCTCAGCAGAGGACAGGCTGGGGGTCGGCCTGGGGACTGGGACTGGGCCTGGGCTTGGGCTGGACCGCCTGGGCCAGGACGCAGAGAGTAGGAGAACCGAGACCCTGGGGGCCAGTTGGCATTGGAATCGGGGTAGGAGATCGGGGGTCCCGGACAGGCCCGGGGGGCATGCGTTGCTCTCTGCGCGTGTGGGTGCTGCTGGGGTCACTGgctctcctcttcctcacctCGCTGCTCTTCTCGCTCTCTTTGAGAGGGGGTCCCGGCCTGCCCTACCTGGACCCAGGGAACGGCTGGGAAGAGTCACGCAGGGTGAAGCTGGTTCCCAACTATGCCGGATCCCACAAGCCGGTTCCAGCTGAGGGCAGCCAGCCGAAAACATGTGCCTGCGTTCGGTGTGTGGGCGACCCGGGCGTGTCCGACTGGTTTGATGAGAATTATGACCCGGACATCTCGCCTGTCTGGACAAGGGACAACATCCAGCTGCCTTCAGACGTCTACTACTGGTGGGTGATGCTGCAGCCTCAGTTTAAGCCCCACAGCATCCAGCAGGTGCTCCTGAGGCTGTTCCAGGTTATCCCAGGCCGCTCGCCGTATGGCTCGTGGGACCCCGCCCGCTGCCTGCGCTGTGCTGTTGTTGGCAACTCAGGCAACCTCCGGGGGACTGGCTATGGGCCAGTGATTGACGGCCACAACTACATCATGAGGATAAACCTGGCTCCCACAGTGGGGTACGAGGAGGACGTGGGCAGCCACACCACCCACCACTTCATGTACCCGGAAAGTGCCAAGAACCTGGCTACCAATGTCAGCTTTGTTCTAGTGCCCTTCAAGACTCTGGACCTGCTCTGGATCACCAGTGCCCTCTCCACCGGCCAGATTCGCTTtacCTATGCCCCAGTGAAGCAGTTTTTGCGTGTGGACAAGGATAAGGTTCAGATCTTCAATCCTGCGTTCTTCAAGTACATCCACGACCGCTGGACAAGGCACCATGGACGCTACCCTTCCACAGGCATGCTGGTCCTCTTCTTTGCCCTACATGTGTGTGACGAGGTGAATGTATTTGGCTTTGGAGCAGACAGCCGAGGCAACTGGCACCACTACTGGGAGCAGAACCGCTACTCAGGAGAGTTTCGTAAAACAGGCGTCCACGATGCAGATTACGAGGCCCAGATCATAGACCGGCTTGCCAAGGCTGGCAAAATCACCGTCTTtcctggaaaatgaaatcctagAGAAGGTGTGAGGGGGGGTTGAACTCAACAACCTTTCAGTCCCAGCTCCAGCTGACTTTGTTTTACGTTTGTGTACTATCTACTAGTGCTTTCTGATTGGAAACAGTCCTGACGAATGATTCGGGACTACTCCTCACGGATGGCCAATCCTGATTGGTCAGGATATAAGCCCTCCTCCTTTTTACTGGCGGTGTCGTGAGAAGGCAGTTATAACCGTTCCTTTCAGGCCTACCTCAACCAGGACAATGAATCGCTGATGGAGGAACACTGATGGCGTCCTCCCTTCTTAAACCAGCGGGTTGGGTTTCAGCGTTAGGGGCTGGTAAAGCCAGCTCACGTTCACCAGAAGGACTGCACAGAGAAAGCTAGCACAGAAAACACCACAGTATGTAATCAAACTTAATGCTTGTCAATCATCCAAGCCATGCCTGCCTCTCGTGTGCTGAGTCAGTGAAGCAGGAAGATGAAGTGGAGGGTGTGATCAACCAATAGTGACCGCTGTGCTAGTGCTACAGTCTTCAGTGGTTCAGGCGGGAATGGGCAGTCACAACCCGCTCGCCATCCCCACTGTGCTGCATTGCAGCAGGTAGAGACCTTGTGTCAACAGGGGGTGCACTTAAGCAAGTGGAAGTTTACAAGAAGTGTTTTAAGTTTgtagttttaaacattttaccagTATGTTTTATCGTGTTAAAGGGTCAGTGTGACCCCACATCACTGTGCTCTGAAACCCGTTGGACAGATGTTAGCCATTACTATGTTTGTTGAATTATTATAACGGGTCTTGCCACACAGTATTAAGTCATTTGATCGATCATTTTGAGGGGAACTGAAGttcacacttacactcactagTGCAGGCTTAACAGAAACCACTTAAGTAGTCCAGTGTGCTCACATACACAGTCTGTGTTTAGACGTACAATGAAGTCAAGCAGTATTACTCACTCAGAATTTGTTTACTGTCTTCTGAGGTAGAGCTGATATATCACTGAGCCAGTGTGTTTTACTGACAAAGATAATGGAGTACCATCTGCTGCCACCTCGTGTCCACTGAGGGACACTACCTTGCTAAGGAGCatgaacaaaaacatttttcagtggtaAATCCAGGGTTGGAATTCCAAAGATGTTTGGAAAAATCCATGTATTTAGTGCTTTGCTGTGAAATGCTTCATCACAGAGAAATCTAATGACTCCTGATTTCTTTACAGTGGGGTGGGATAGGAACCAAAGGTCAACAAACTAAATCAAATGCCATGCATCTGCACAAGTATAACTATTATACTTGCTGTCAAAAAAACACCAGtcaataaaacaacacatgTCCTGAGTTCTTTTTCTGTATACACATTTGATCATGgtaaacttttttatatatggGCATTGTTTTGCCTAGCAAGTCCCCTGCATGTTCTTTTCCACACTACAAAAATGCATCAAAAAATGTTTCAAGCATCAGACACTGTATTGTAGCCCTTATATGTATCAATTCTATAAAAAGGAACTTTTAGAGGCATTACATATCTGGGTTTGGACATCTAGTTCCCATCACCCCGCTGTGAACAAttctgactggtagaattctctAAGAACTAAGCATTTCACATCAACCCACTCAGAATCACtttggctgtgtcccaattgtgtACTATACACTAATACTATATGGTAAATACTATATACTAATCTTAATAGTGTGAGATCGGCATCTTAATACATGCTACCCTGTTTTGTAccaacaagaaataaaaaagctattGCTGCTAAACTTGTTACACGTTGTTATCCGCGTCCAAAAGCCTAGGCTGCATTTCTCAGCTACTGTGTATTATTTAAAGGCTGTCCTACAGTAAAGGATCCTTGGTATACAGCTGAGAAATGCAGCTGATTTTCAGAGCCTTTTCGTTGAACAATTCTCtgtgcacataaacacaaagaaaaggaaaaaggtaccacaaaaactgaataaaaaagaagcagtttgttttaaaatgttttttttattagaataattaatgaaaaatTGAAAATGTATGCAAGTTTTGCACCGCAAAAGGCCTTGTTACTGAGTGTTTATTGGACAGTCCTACCAAGGGTCCGCCCTACCTCAACTGCATCCTAGGCTTTGTAACGCAGCTATTGTTCCAGATGTAAGTATTGCCAATGTTTCAGTGTAGTATTGCTTGTCAGATCTTTAATATTGTGGATATTTGAGTACTGAGTATTTAACTTTGACACTCTAATCCATACTACACACTTCATATTCAAAACTTGTTAGTATTAGCAATTTGTATGCCACTGGGACACACCCATTTTGTATATCCTAACTGTTAATTCATGTAATTGGATTAATATGTTAAAATCTATGGAATTTCCCCTTTAATTGTACTTTGAAAAGCTCACACTGCTCCACATTGAGGAGATTTGGAGACTGGCAGCATCACTATGTGGTCTCCTGtcacatttcttacatttctcgTAACATTACTGTGACAGATAGCTTAGACTCAGACTTTGTGCAGCATGTCAGAGTGTAGCATTAAACTGTGTGTCAGTGCCATTTGGTATTTAGGAAAGATTCATAGCTGCATTTGGAATCAATGCGATGATTCAATTTGTGAcggttatttgttttatttttgacaaTGGGGTTCATCTCCCTGAATCTGCCACAGCTTTTGCTTCTTTAGAGACTCTGAGACAACAAAAAATTCTGGACTGATTTAGGCAGTAGTTAAGCAGTCTTATGGAAAAGTTTAGAGTGTATAGAATTTGTTCGCTTAGTTTCATTTAGAAAATCAGCAAAGTGTGCCATTGGACTAgtggtgcccatacttttgcttAAGAAAACATGTCCAGTGAAGCCTGACGTCGTGGGCAGCCCTGGTCAGATTTTATGTTTCTGTGAACAAAGCaagtaaaatataatttgaattgAGTTAAGAAAGAaatgtgttttacactttaagcaagaacccttttttttttcctttgacaaattcaaaataaaaggataaggTTTAGGCATCCTTGCGTATTTGAGCTGGTGGTGCTAATCTAAAGGTAAATCAAAGAGTTTAGCTAAGTGAGGAAACTAATATTTGCATCCAATTTTATCCTAACTGGACAATTCAGCCAAGTGGTCACACAGAGGCAACAgagatatatattgttataattcTGCCAATcaacaaaaaattatttatattattacttttagAGGTAACAGGAAATATGagaattttaattgttttttttttttttcagtctaaaAATTTTCAAAACAAGATTAATAGATCAATCTATTTGACAGcagttgatttttttgcacGCACCTATTCACAGTAACAGGAATTTTGACAAGGAGTACCCAAACTACTATTTCATGCCACTGTGGAtatatctatattattttaaccatcacttatgttttatttgttttctatttAAGTACGTAGAGCAGTGTTGTGTGGAAGGGAAGAGGGTGGCAGGGAGGTACATGCTTTCTGCTTTGGCATAGTCCATGTTTTCAGGTGCAGTAGAACCTGTTTTGTAACGTAGACATATCAGCTGTTTCCAGTAGTGTGGAAAACATGCGCAGACGCACCCGCACACACTTTCTCGCATATACTTGCGTGCCTTGTCCTGGCTATGGCCACATCCTCCCTGCAGTGCAACAGAAACCTCATGTTCAGTGTAGGCACATAGTTTTTTAAGCCATGTTCTCGTTCTCACACACGATTGGTGGTCAGATGTTCTCCAAGGCTCCATCCCAGTTCTCAAGCAGGGCAAAATTTGCGCAAaagatcaaacacacacacacactcctctgtgAGGATTTCGTTAATATTGCGCTTCACATTAGGCGTGTCCTCCCCTCCTTAAAGCTTGTGCAACTCTCATCCATCACTGCTGAGCACTGTGCCTTCAGGACCAGGGTGAAATCCCTCCCACCCTGTCCTCTCACCTCTTCCCTTTTCATTCACTTGCAAGAAACCCATCATGGCCGTACAAATCTAACCTCTGTTGATTCTTCATTCACAATCCATATCTGAGGAGAAAGAAGTATAGTTGGGATGTATGGTGAGATCAAAGAACCTGTGAGATGTTGGGAAGACTAAACTGCAGTCCATCACCAAAGAATCCCATTATCTATACCTTTTAATTTGATACCTTCTTATTAATCTGGTTTTATAAAGATAAACAACTTTACTAGTATGAAAAAAAgacaagggaaaaaaaatcttgtttttgaGAGTGCAAAGAAGATCCAAATACACAGATTGtcaaaaaaatagttgcacctcGATAGAATAGACCAATAGGAAGCAAACTGGTGAGTAGTTGTGCCAGTTATGACAGCATAAAGTGACTCCGAATGTGGAGGTACTGTGATCAGTTCTATGATCAATGGTTTGCTGTCACTCATCCAGATAGCCTGGGGTCTTGATGTTGGATGCAATTTCGTACAATACCAGTTCTGCTTTGGTCACAATTAGGCACCTTGACAGTccaatttaacattaaaaaggtCCTGCAACAAATGGCTCTACTTTTCTCATTGCACACTCTGCTATGcattttcaacaggacaatgctcatccacatacagCTGCTGtgtcaagagcttgccttggcCAGCATCATTACATGCGAGGACGTCTGGCACGTCACactacacatgcattacaccctacttctgtatgtgtagattaaaaaatatgacCCAGGATGCTCATATCCATCTACATTTATAAATCacttattgttcctggtaatctTTATCTTAATTccaaatagcattgcaatcaaGCACGTcctttctgggtgcaactatttcttTGACAATTAGTGTAAAAAGCGAGGAGAACCAAAATGGTGTTTTtcctctaaaaaaaatgtaataaagcagggctgctgtgattgggTGACAAGGCTGGAACACAGTCCATTTCACCAATGGCACATCAAAATCACTTTGACCCGTCTTTAAGTACTGACGTCCACCTGCACTGTTGGTGATATTCCTATCTCACGCTTTAATATTCTTCACATCAGGGGCCTACAGATCTGTGCCTGACTCCTTCCAAGAGGGGAAAAgcacttttctctctttcctttttatcGACAGGGTTGCAGTAGGCCAGTAGTTTGGAAGGTTAATGGAAGCATGACTGATGTTTTCACTTATGGATCGTTGGGATTTGGTTGAGGGAAAAGCTCTGACCGATTCCACCACCCACATCTTTGACACAGAGGGCCTCTCTTTCAGCTCTAGAGGTCCACAAGCAAACCAGTTATCCACCGACAACACAGACTGTACATATTCTCCTGGTATTTTACTGCGCTTCTAAACAAAACTCCTCCTCATTAGTGGTGTAGTGACCATCGATGGGTCAGTGctctttttccttcattttccaATTTCAATCTCTGTGTGTAATTATGGACTGTTTTTATCTTATGCTATTGTaagaaataaatgcaaattttaaaaaaggca

Function

symbol description
st3gal2 Predicted to enable beta-galactoside (CMP) alpha-2,3-sialyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; fin; head; pleuroperitoneal region; and segmental plate. Orthologous to human ST3GAL2 (ST3 beta-galactoside alpha-2,3-sialyltransferase 2).

NR:

description
PREDICTED: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0003836 beta-galactoside (CMP) alpha-2,3-sialyltransferase activity molecular_function

KEGG:

id description
K03368 SIAT4B; beta-galactoside alpha-2,3-sialyltransferase (sialyltransferase 4B)

RNA

RNA id representative length rna type GC content exon number start site end site
TU215287 False 2263 lncRNA 0.43 5 16654136 16725205
XM_007249175.3 True 6918 mRNA 0.44 6 16697600 16725209

Neighbor

gene id symbol gene type direction distance location
n4bp1 NA coding upstream 123541 16512334 ~ 16530595 (+)
LOC107197482 LOC102776007 coding upstream 142827 16506896 ~ 16511309 (+)
cbln1 cbln1,LOC107549644,LOC107583779 coding upstream 369092 16274679 ~ 16285044 (+)
LOC111194834 NA coding upstream 417173 16236180 ~ 16236963 (+)
LOC103038143 NA coding upstream 686046 15960149 ~ 15968090 (+)
trnal-cag_11 NA coding downstream 38317 16763526 ~ 16763608 (+)
pllp pllp coding downstream 38823 16764032 ~ 16773000 (+)
hacd3 hacd3,LOC107738726,LOC107686290,LOC107672296,LOC107596982,LOC107583769,LOC107742880 coding downstream 117452 16842661 ~ 16852459 (+)
slc24a1 slc24a1,LOC107738725,LOC107596980,LOC107742879,LOC107686291 coding downstream 134683 16859892 ~ 16884155 (+)
rab11a rab11a,LOC105007892,LOC106591986,LOC100698633,LOC106588008,LOC103378951,LOC106562755 coding downstream 196160 16921369 ~ 16931362 (+)
G158793 NA non-coding upstream 65664 16587927 ~ 16588472 (+)
G158786 lonp2 non-coding upstream 78762 16574684 ~ 16575374 (+)
G158776 NA non-coding upstream 363129 16290776 ~ 16291007 (+)
LOC111194770 NA non-coding upstream 667388 15969286 ~ 15986748 (+)
G158652 NA non-coding upstream 674767 15979026 ~ 15979369 (+)
G158823 aars non-coding downstream 3247 16728456 ~ 16730115 (+)
G158818 NA non-coding downstream 13263 16738472 ~ 16738877 (+)
G158837 arl2bp,LOC107549653,LOC107686354,LOC107672193 non-coding downstream 49471 16774680 ~ 16777218 (+)
LOC111194771 NA non-coding downstream 92026 16817235 ~ 16821091 (+)
G158852 ppcdc,LOC107738727,LOC107686355,LOC107583771 non-coding downstream 111504 16836713 ~ 16840357 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other upstream 82678 16542878 ~ 16571458 (+)
G158779 NA other upstream 274313 16379259 ~ 16379823 (+)
LOC103041352 NA other upstream 877970 15775424 ~ 15776166 (+)
LOC107197617 NA other upstream 882191 15771295 ~ 15771945 (+)
LOC103041858 NA other upstream 885475 15768055 ~ 15768661 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other downstream 54297 16779506 ~ 16798400 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other downstream 376403 17101612 ~ 17172228 (+)
zwilch zwilch other downstream 452466 17177675 ~ 17189251 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other downstream 601891 17327100 ~ 17372206 (+)
rapsn rapsn other downstream 1245887 17971096 ~ 17985904 (+)

Expression


Co-expression Network