G158818



Basic Information


Item Value
gene id G158818
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 16738472 ~ 16738877 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU215291
CAGAAAAACCCCATATGCCTTATTTggatcattatttttatatatgtctGTCCAGGCTTGTTTCATTAAGTCCACCCTGAGAGCTGCTAAAGTTTCTGGTGTTCTATGTCTtactaatttaaatgtatttgaccttttttcttttttaaccatAAACATGTTTTGAAATACTGCAAAGACTGGAAGGTGATCACTGATGTCTATTATGAGCAGTCCACCAATTATTCTAGCTTCTATTTTGTTTGTCCATAtgttgtcaatcagtgttgcagTGTCTGTAGTTATTCTGATGGTTTTATGATTACAGGGAATAGACTGTTGCTATACAATGAATTCATAAAGTCTGTTGTCTTTTTATGCCCATTTGGATTTAATAAATCAATGTTAAAATCCCCACATATAATTT

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU215291 True 406 lncRNA 0.33 1 16738472 16738877
Loading

Neighbor


gene id symbol gene type direction distance location
n4bp1 NA coding upstream 207877 16512334 ~ 16530595 (+)
LOC107197482 LOC102776007 coding upstream 227163 16506896 ~ 16511309 (+)
cbln1 cbln1,LOC107549644,LOC107583779 coding upstream 453428 16274679 ~ 16285044 (+)
LOC111194834 NA coding upstream 501509 16236180 ~ 16236963 (+)
LOC103038143 NA coding upstream 770382 15960149 ~ 15968090 (+)
trnal-cag_11 NA coding downstream 24649 16763526 ~ 16763608 (+)
pllp pllp coding downstream 25155 16764032 ~ 16773000 (+)
hacd3 hacd3,LOC107738726,LOC107686290,LOC107672296,LOC107596982,LOC107583769,LOC107742880 coding downstream 103784 16842661 ~ 16852459 (+)
slc24a1 slc24a1,LOC107738725,LOC107596980,LOC107742879,LOC107686291 coding downstream 121015 16859892 ~ 16884155 (+)
rab11a rab11a,LOC105007892,LOC106591986,LOC100698633,LOC106588008,LOC103378951,LOC106562755 coding downstream 182492 16921369 ~ 16931362 (+)
G158823 aars non-coding upstream 8357 16728456 ~ 16730115 (+)
G158793 NA non-coding upstream 150000 16587927 ~ 16588472 (+)
G158786 lonp2 non-coding upstream 163098 16574684 ~ 16575374 (+)
G158776 NA non-coding upstream 447465 16290776 ~ 16291007 (+)
G158652 NA non-coding upstream 759103 15979026 ~ 15979369 (+)
G158837 arl2bp,LOC107549653,LOC107686354,LOC107672193 non-coding downstream 35803 16774680 ~ 16777218 (+)
LOC111194771 NA non-coding downstream 78358 16817235 ~ 16821091 (+)
G158852 ppcdc,LOC107738727,LOC107686355,LOC107583771 non-coding downstream 97836 16836713 ~ 16840357 (+)
G158855 NA non-coding downstream 141641 16880518 ~ 16880840 (+)
G158873 NA non-coding downstream 200651 16939528 ~ 16939732 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other upstream 13263 16654136 ~ 16725209 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other upstream 167014 16542878 ~ 16571458 (+)
G158779 NA other upstream 358649 16379259 ~ 16379823 (+)
LOC103041352 NA other upstream 962306 15775424 ~ 15776166 (+)
LOC107197617 NA other upstream 966527 15771295 ~ 15771945 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other downstream 40629 16779506 ~ 16798400 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other downstream 362735 17101612 ~ 17172228 (+)
zwilch zwilch other downstream 438798 17177675 ~ 17189251 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other downstream 588223 17327100 ~ 17372206 (+)
rapsn rapsn other downstream 1232219 17971096 ~ 17985904 (+)

Expression


G158818 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
End of interactive chart.

G158818 Expression in each Bioproject

Bar chart with 5 bars.
G158818 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
End of interactive chart.

Co-expression Network