G158874 (megf11)


Basic Information

Item Value
gene id G158874
gene name megf11
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 16948464 ~ 16948756 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU215360
AGCGAGTAGTCAGTGTTGGTTATACGCAAGGCCGGCGTGTAGGACACGCTGGGCATGTCCTGACCCTTGTCCCGCTGCCGCTGCCTGTACCACACAAACAGGCTGAGCATTGCCatgatgatgaggaggaggaagatgatGCCCATGACGGCACCGGCTGACTGGCGTTCAGAGGTCAGGGCTGGGCTGATCTTGGTGTAGGGATTCAGCTCCTCCATCATTAGAGCcgctgagacacacacacacaaacacacacacacacacacacacacacacacacacacacacacaca

Function

symbol description
megf11 Predicted to enable zinc ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MEGF11 (multiple EGF like domains 11).

NR:

description
multiple epidermal growth factor-like domains protein 11 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215360 True 293 lncRNA 0.56 1 16948464 16948756

Neighbor

gene id symbol gene type direction distance location
rab11a rab11a,LOC105007892,LOC106591986,LOC100698633,LOC106588008,LOC103378951,LOC106562755 coding upstream 17102 16921369 ~ 16931362 (+)
slc24a1 slc24a1,LOC107738725,LOC107596980,LOC107742879,LOC107686291 coding upstream 64309 16859892 ~ 16884155 (+)
hacd3 hacd3,LOC107738726,LOC107686290,LOC107672296,LOC107596982,LOC107583769,LOC107742880 coding upstream 96005 16842661 ~ 16852459 (+)
pllp pllp coding upstream 175464 16764032 ~ 16773000 (+)
trnal-cag_11 NA coding upstream 184856 16763526 ~ 16763608 (+)
LOC107197433 NA coding downstream 346451 17295207 ~ 17301682 (+)
LOC103027004 smad3,LOC108424035,LOC105892538,LOC103353199,LOC107740443 coding downstream 476462 17425218 ~ 17447793 (+)
iqch NA coding downstream 509259 17458015 ~ 17492931 (+)
c18h15orf61 cunh15orf61,c4h15orf61,LOC103025902,LOC107738714,LOC107583911,LOC107718314,LOC107686305,LOC107596966 coding downstream 545037 17493793 ~ 17498771 (+)
LOC103029280 skor1 coding downstream 615119 17563875 ~ 17571917 (+)
G158873 NA non-coding upstream 8732 16939528 ~ 16939732 (+)
G158855 NA non-coding upstream 67624 16880518 ~ 16880840 (+)
G158852 ppcdc,LOC107738727,LOC107686355,LOC107583771 non-coding upstream 108107 16836713 ~ 16840357 (+)
LOC111194771 NA non-coding upstream 127373 16817235 ~ 16821091 (+)
G158837 arl2bp,LOC107549653,LOC107686354,LOC107672193 non-coding upstream 171246 16774680 ~ 16777218 (+)
G158875 NA non-coding downstream 40014 16988770 ~ 16989051 (+)
G158876 NA non-coding downstream 46361 16995117 ~ 16995418 (+)
G158877 megf11 non-coding downstream 50048 16998804 ~ 16999039 (+)
G158878 NA non-coding downstream 130356 17079112 ~ 17083738 (+)
G158881 NA non-coding downstream 135197 17083953 ~ 17084261 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other upstream 150064 16779506 ~ 16798400 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other upstream 223255 16654136 ~ 16725209 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other upstream 377006 16542878 ~ 16571458 (+)
G158779 NA other upstream 568641 16379259 ~ 16379823 (+)
LOC103041352 NA other upstream 1172298 15775424 ~ 15776166 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other downstream 152856 17101612 ~ 17172228 (+)
zwilch zwilch other downstream 228919 17177675 ~ 17189251 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other downstream 378344 17327100 ~ 17372206 (+)
rapsn rapsn other downstream 1022340 17971096 ~ 17985904 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other downstream 1576772 18525528 ~ 18576437 (+)

Expression


Co-expression Network