G158876


Basic Information

Item Value
gene id G158876
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 16995117 ~ 16995418 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU215362
CTGCGTCCTGTGTAGCCTGCCACGCACTGGCACTGCCCGGTGATGTGGTCACACAGTCCTCCATTGCGGCACGAACAGTCCCTGCTGCAGTTGATGCCATATTTGCCTAATGGGCAGGGCTGGGCACATACAGACCCCTGTGGTGCAGTAAGATTGGAaagacagtatgtgtgtgtgtaaaagagagagaggaagggagttTTAGAGGATAGAAGAGACTAATCCACCCAAATCCAATCAAGTCTATCACTAAAGCCTCAGCGCTTTAACACATAAGATGGTACAAAGCCAGTATTAATGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215362 True 302 lncRNA 0.49 1 16995117 16995418

Neighbor

gene id symbol gene type direction distance location
rab11a rab11a,LOC105007892,LOC106591986,LOC100698633,LOC106588008,LOC103378951,LOC106562755 coding upstream 63755 16921369 ~ 16931362 (+)
slc24a1 slc24a1,LOC107738725,LOC107596980,LOC107742879,LOC107686291 coding upstream 110962 16859892 ~ 16884155 (+)
hacd3 hacd3,LOC107738726,LOC107686290,LOC107672296,LOC107596982,LOC107583769,LOC107742880 coding upstream 142658 16842661 ~ 16852459 (+)
pllp pllp coding upstream 222117 16764032 ~ 16773000 (+)
trnal-cag_11 NA coding upstream 231509 16763526 ~ 16763608 (+)
LOC107197433 NA coding downstream 299789 17295207 ~ 17301682 (+)
LOC103027004 smad3,LOC108424035,LOC105892538,LOC103353199,LOC107740443 coding downstream 429800 17425218 ~ 17447793 (+)
iqch NA coding downstream 462597 17458015 ~ 17492931 (+)
c18h15orf61 cunh15orf61,c4h15orf61,LOC103025902,LOC107738714,LOC107583911,LOC107718314,LOC107686305,LOC107596966 coding downstream 498375 17493793 ~ 17498771 (+)
LOC103029280 skor1 coding downstream 568457 17563875 ~ 17571917 (+)
G158875 NA non-coding upstream 6066 16988770 ~ 16989051 (+)
G158874 megf11 non-coding upstream 46361 16948464 ~ 16948756 (+)
G158873 NA non-coding upstream 55385 16939528 ~ 16939732 (+)
G158855 NA non-coding upstream 114277 16880518 ~ 16880840 (+)
G158852 ppcdc,LOC107738727,LOC107686355,LOC107583771 non-coding upstream 154760 16836713 ~ 16840357 (+)
G158877 megf11 non-coding downstream 3386 16998804 ~ 16999039 (+)
G158878 NA non-coding downstream 83694 17079112 ~ 17083738 (+)
G158881 NA non-coding downstream 88535 17083953 ~ 17084261 (+)
G158891 NA non-coding downstream 161724 17157142 ~ 17158451 (+)
G158882 rpl4 non-coding downstream 177649 17173067 ~ 17177192 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other upstream 196717 16779506 ~ 16798400 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other upstream 269908 16654136 ~ 16725209 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other upstream 423659 16542878 ~ 16571458 (+)
G158779 NA other upstream 615294 16379259 ~ 16379823 (+)
LOC103041352 NA other upstream 1218951 15775424 ~ 15776166 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other downstream 106194 17101612 ~ 17172228 (+)
zwilch zwilch other downstream 182257 17177675 ~ 17189251 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other downstream 331682 17327100 ~ 17372206 (+)
rapsn rapsn other downstream 975678 17971096 ~ 17985904 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other downstream 1530110 18525528 ~ 18576437 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G98944 NA non-coding NC_047600.1 CM018546.1 13690508 ~ 13690919 (+)
bowfin (Amia calva) AMCG00017902 NA misc CM030131.1 CM030131.1 27838251 ~ 27839790 (-)