G158991


Basic Information

Item Value
gene id G158991
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 17283467 ~ 17283882 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU215516
ggcacggtggcgcagtgggtagcacttccgcctcacagcaagacggcctgggttcaattcccagctggggcgacccgggtcgtTCTGTgcggagtttgcacgttctccccgtgtctgcgtgggtttcctccgggtgctccggtttcctcccacagtccaaagacggcacgttcaggctaattggatgtcggatacaaattgccccttaggtgtgagtgtgtgaatgaatgtgtctgtgtgtctgtctgtgtctgtctgccctgcgatggattggcggcctgtccagggtgtatcctgccttccgcccgatgccggctgggataggctccagcaccccccccttAATGGATGAAGTGgttgataataatgataatgacatCTACAGAACTGAAGATGCCATCATTTGCAGATATTTT

Function

GO: NA

KEGG:

id description
ko03430 Mismatch repair

RNA

RNA id representative length rna type GC content exon number start site end site
TU215516 True 416 lncRNA 0.56 1 17283467 17283882

Neighbor

gene id symbol gene type direction distance location
rab11a rab11a,LOC105007892,LOC106591986,LOC100698633,LOC106588008,LOC103378951,LOC106562755 coding upstream 352105 16921369 ~ 16931362 (+)
slc24a1 slc24a1,LOC107738725,LOC107596980,LOC107742879,LOC107686291 coding upstream 399312 16859892 ~ 16884155 (+)
hacd3 hacd3,LOC107738726,LOC107686290,LOC107672296,LOC107596982,LOC107583769,LOC107742880 coding upstream 431008 16842661 ~ 16852459 (+)
pllp pllp coding upstream 510467 16764032 ~ 16773000 (+)
trnal-cag_11 NA coding upstream 519859 16763526 ~ 16763608 (+)
LOC107197433 NA coding downstream 11325 17295207 ~ 17301682 (+)
LOC103027004 smad3,LOC108424035,LOC105892538,LOC103353199,LOC107740443 coding downstream 141336 17425218 ~ 17447793 (+)
iqch NA coding downstream 174133 17458015 ~ 17492931 (+)
c18h15orf61 cunh15orf61,c4h15orf61,LOC103025902,LOC107738714,LOC107583911,LOC107718314,LOC107686305,LOC107596966 coding downstream 209911 17493793 ~ 17498771 (+)
LOC103029280 skor1 coding downstream 279993 17563875 ~ 17571917 (+)
G158882 rpl4 non-coding upstream 106275 17173067 ~ 17177192 (+)
G158891 NA non-coding upstream 125016 17157142 ~ 17158451 (+)
G158881 NA non-coding upstream 199206 17083953 ~ 17084261 (+)
G158878 NA non-coding upstream 199729 17079112 ~ 17083738 (+)
G158877 megf11 non-coding upstream 284428 16998804 ~ 16999039 (+)
G159014 NA non-coding downstream 164950 17448832 ~ 17451332 (+)
G159017 aagab non-coding downstream 171433 17455315 ~ 17456977 (+)
G159028 NA non-coding downstream 312177 17596059 ~ 17599354 (+)
G159115 NA non-coding downstream 586125 17870007 ~ 17870468 (+)
G159120 kif23,LOC107686310 non-coding downstream 643106 17926988 ~ 17938088 (+)
zwilch zwilch other upstream 94216 17177675 ~ 17189251 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other upstream 111239 17101612 ~ 17172228 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other upstream 485067 16779506 ~ 16798400 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other upstream 558258 16654136 ~ 16725209 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other upstream 712009 16542878 ~ 16571458 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other downstream 43218 17327100 ~ 17372206 (+)
rapsn rapsn other downstream 687214 17971096 ~ 17985904 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other downstream 1241646 18525528 ~ 18576437 (+)
G159666 NA other downstream 2901634 20185516 ~ 20186919 (+)
G159728 NA other downstream 3452716 20736598 ~ 20737049 (+)

Expression


Co-expression Network