CI01000012_09926268_09941904 (UNC5B)


Basic Information

Item Value
gene id CI01000012_09926268_09941904
gene name UNC5B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9926073 ~ 9942394 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_09926268_09941904.mRNA
ATTTATTATCTGAACATATGCTTTTAAGTTATAGCACTTAGTCACCCCACTATAATTAAGGTTAGTCAGAAAAATACCATTTCACAGTTGACAAACCTAAAAATTTGTCAGCTTGGAAAAGTGTGTACTACAAATCACAGAAAGTGCAAAACAACAACTTTACCATTTGGCCCCGCGGCGCCGGTGTCTTCAGACCTCATTTTCACTTGGTAGTCAATAGCCTGTGTAGCGTTTAATGCTTGAAAGGTTAACAGCATTGTCGTGTTGGAGGTGACAGGGCCTGGGCGTGGAGCCGTGAAACACGCTGGCCCCTGGATGAGCTCTGTGCTGTGGTGCTGGGAGGGATCTGTCACTGGGAAAATGTCAAGGGATAATGTGTGATCACTGGGTGTTTCAATGGAAGGTCAAGCTCCCCCACCTTCATCTTGGCTCCGTTTAAACTCACTGGGATGGAGAAGAGCAAATGCTGTATTACTAGAGTACATTTGAAATGCCAGGGACCAAGACTTTTTCAACACACACCGACTGTCTCGCCATTACCCCTGAGGCCAAACTCATTTGCTGTGACAGATACACCCTTGTGAATACACAGTCGCATAAACCGTACACATGTTCTTACCGCTTTCTCTTCTGTTTTGTAGATGGCAGCGATTACAGCGAGGTTCTCCCGGATTCGTTTCCGTCTGCTCCGGCCGAACCATTGCCGGAATTCCAGAGCGAGCCAGAGGACGCCTTCATAGTGAAAAACAGACCTGTGAAACTTTCCTGCAAGGCTGCTCCTGCCACTCAAATATACTTCAAATGCAATGGAGAATGGGTGAACCAAAATGACCATGTGACCAAGGAGAGTCTGGACCCTATTACAGGTCTGGTAGTGAGAGAAGTAGATATCTCTGTCTCCCGGACGCAGGTAGAGGAGTTGTTTGGGCTGGAGGATTATTGGTGCCAGTGTGTTGCCTGGAGCTCGGCAGGCACCACAAAGAGCCGGCGGGCTTACGTCCGCATCGCCTACCTAAGGAAGAACTTTGAGCAGGAGCCACTTGGCAGGGAGGTGCGTCTGGAGCAGGAAGTCTTGTTGCAGTGTCGTCCACCAGAGGGCATCCCGCCTGCTGAGGTGGACTGGCTGAAGAATGAAGAGCTCATTGACCCAGCGCTGGATTCTAACTTTCTAATTACTATTGACCATGACCTAATCATCAAGCAGGCTCGACTCTCTGACACGGCTAACTACACCTGCGTTGCTCGCAATGTGGTCGCTAAGCGACGCAGCAGCACTGCCACACTCATCGTCTATGTGAGTGGGGGCTGGTCATCCTGGACAGAGTGGTCAGAGTGCAATGCTCAATGTGGGCGGGGCTGGCAGCGACGGACACGCAGTTGCACCAATCCAGCACCGCTCAATGGAGGAGCCTTCTGTGATGGCCCACCATTCCAAAGAGTCACCTGCACCACCCTCTGTCCAGTGGATGGAGGCTGGACAGAGTGGGCCAAGTGGTCCGCATGCGGGACGGAATGCACACACTGGCGCAGCCGTGAATGTCAAGCGCCCCCGCCGCGTAACGGTGGACGTCACTGCAGCGGCAGCATGATGGAGAGCAAGAACTGCACAGAGGGACTGTGTGCCCGCAATAAAAAGGTTTCTATTGAACATTCAAGCCATCCTCTTGGCCCCGGTGCTGGTGTAGTGGTGTACGCAGGACTGGTGGGGGCTTTGCTGCTGTGCGTGATCCTCGTGCTGTGTGTTGGCATCCTGGTCTATCGCCGAAGCTGCCGCCATTTCCATGGTGAAATCACAGATTCGTCATCGGCCCTTACTGCTGCCTTCCACCCTGGCAACTACAAACCACCACGACAGGATAATCCACACCTACTGCATCCGACAGCCCCTCCTGACCTCACAGCCAGTGCCGGAACTTTCCGCGGGCCGCTTTTCGCACTGCAGCAGGCTACCCTGGACTCTCAACATAAGATCCCTATGACCACGTCTCCCCTGCTGGACCCACTTCCTAGCCTGAAGATAAAGGTGTACAACTCCTCTACCATGTCCTCCCTCGAGCTGCCGACAGGCCCGGGATCTAATGACGGGGAGATTATGAGCCTGAAGACCGTCGGCTCTGGACCTAAAGACTACCATGGACATACGCTGCCCAGGGAGCCCAGTCACAGTGCCAGCGCCACACTGGGCTCCCTGGGTGGTCGTCTCACCATCCCTAATACAGGGGTGAGCCTGTTGGTTCCACCAGGGACAATTCCTCAGGGCAAGTTCTACGAGATGTATCTCATTATAAACAAATGGGAGAAAACAACGTTGCCATCAGATGGTAGTCAGACGGTATTAAGTCCAGTGGTGAGCTGCGGACCCTCCGGCATGCTGCTGAGCAGACCTGTGGTCCTTAGTCTGCCCCACTGCGCACAGCTAGAGCCCCCAGACTGGACCCTCACCCTCAAAACGCAGAACCATCAAGGCGCCTGGGAGGAGGTGCTAACTGTGGGAGAGGAGAGTCTGTCGTCTCCCTGCTACCTACAAGTGGAGGAGCAAAGCTGTCATATTCTTATGGAGCAGCTGGGGACGTATGGTCTGGTGGGACAGTCGGCTCCCCCTCGGCCAGCCTGTAAGAGATTGCAGTTGGCCCTCTTTGCTCCTCGGGCCCCGTGCCTCTCATTGGACTACAGCCTGAGGGTCTACTGTATACAGGACACCCCACATGCCCTTAAGGAAGTATTAGAAGTCGAGCGAAGTCTGGGTGGGGTTTTACTAGAGGATCCCAAACCGCTCCTCTTTAAGGACAGTTACCACAACCTGCGGCTATCGATCCATGACATTCCTCATTCGCATTGGAGGAGTAAACTCCTGGCTAAGTATCAGGAAATCCCGTTCTATCACATTTGGAGCGGGAGTCAGCGGCCGTTGCATTGCACCTTCAGTCTGGAGAGAGGAAGCCTGGTGGTTTCCCAGCTCACCTGCAAGATCTGTGTCAGACAGGTGGAGGGGGAGGGACAGATCTTCCAGCTTAACACTGACATCCAAGAGACCTTGCCCCCCCACTCACCATTGCCAGCAGGAGGTTCATGTCTGCCTTCGTCTCAAGTGGGCCCATATGCTTTCCGACTGCCCGTATCCATACGGCAGAAAATTTGTGCCAGTCTAGATGCCCCCAGCGCACGCGGCTGCGACTGGAGAATGCTGGCTCGCAGCCTGGGCTTTGACAGGTATCTGAACTACTTTGCAACCAAACCCAGCCCCACAGGTGTGCTGCTAGACCTGTGGGAAGCTTGTCACCAGGGTGACGCAGACCTGGTCTCCTTGGCGACAGCTCTTGAAGAGATGGGCAAGAGTGAGGTCTTGGTTGTCATGACGACGGACGGAGATTGCTGATCGGCAAATCAAAAAGTGTGAAAAGGGACATATTTGCCACTAAACCTAGAATTAATGCAAGCGGATGGAAACTGCACTCCAGTACATCGTTACAACTTGCCTTTTACCTCAGTTCCTTTGTGCTCATGCAGAATTTTCCAAGGATTGCAATGCGTATGAGCTGTGATCAGGCGCTCTGGATGATCTTTGAATAAA

Function

symbol description
unc5b Predicted to enable netrin receptor activity. Acts upstream of or within branching involved in blood vessel morphogenesis and negative regulation of angiogenesis. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in several structures, including immature eye; nervous system; neural keel; pectoral fin bud; and trunk vasculature. Orthologous to human UNC5B (unc-5 netrin receptor B).

NR:

description
Unc-5 homolog B (C. elegans)

GO:

id name namespace
GO:0001569 branching involved in blood vessel morphogenesis biological_process

KEGG:

id description
K07521 UNC5; netrin receptor unc-5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_09926268_09941904.mRNA True 3571 mRNA 0.53 16 9926073 9942394

Neighbor

gene id symbol gene type direction distance location
CI01000012_09894361_09922003 MYOFL coding downstream 3630 9893656 ~ 9922443 (-)
CI01000012_09862141_09892366 PARGA, PARG coding downstream 33707 9861875 ~ 9892366 (-)
CI01000012_09830411_09851586 OGDHL coding downstream 74203 9830165 ~ 9851870 (-)
CI01000012_09789066_09792437 LRIT1A coding downstream 133636 9787695 ~ 9792437 (-)
CI01000012_09782840_09786910 LRIT2 coding downstream 139163 9782610 ~ 9786910 (-)
CI01000012_09974294_09974754 NA coding upstream 30945 9973339 ~ 9975056 (-)
CI01000012_09976030_09976302 NA coding upstream 33177 9975571 ~ 9976367 (-)
CI01000012_09984871_10009730 NA coding upstream 41912 9984306 ~ 10009885 (-)
CI01000012_10114837_10117992 NA coding upstream 172002 10114396 ~ 10119291 (-)
CI01000012_10119912_10169990 NA coding upstream 177518 10119912 ~ 10169990 (-)
G75212 NA non-coding downstream 109037 9815978 ~ 9817036 (-)
G75189 NA non-coding downstream 156564 9766445 ~ 9769509 (-)
G75004 NA non-coding downstream 284129 9641710 ~ 9641944 (-)
G75001 NA non-coding downstream 286424 9639446 ~ 9639649 (-)
G74997 NA non-coding downstream 288929 9636905 ~ 9637144 (-)
G75230 NA non-coding upstream 44971 9987365 ~ 9987685 (-)
G75645 NA non-coding upstream 143557 10085951 ~ 10086261 (-)
G75646 NA non-coding upstream 143881 10086275 ~ 10086512 (-)
G75647 NA non-coding upstream 146662 10089056 ~ 10089273 (-)
G75648 NA non-coding upstream 147611 10090005 ~ 10090218 (-)
G74982 NA other downstream 350101 9575648 ~ 9576149 (-)
CI01000012_09400481_09401810 EIF4EBP2 other downstream 524105 9398076 ~ 9402378 (-)
CI01000012_09082056_09083285 NA other downstream 842584 9081877 ~ 9083489 (-)
CI01000012_09071892_09073410 NA other downstream 852616 9071371 ~ 9073457 (-)
CI01000012_09068458_09070536 NA other downstream 855406 9067906 ~ 9070765 (-)
G75608 NA other upstream 669521 10611915 ~ 10620871 (-)
CI01000012_12047175_12052116 NA other upstream 2106650 12046728 ~ 12052541 (-)
CI01000012_12079581_12084139 NA other upstream 2136542 12078936 ~ 12084260 (-)
CI01000012_12954694_12954954 SF3B5, BRAFLDRAFT_284483 other upstream 3012052 12954446 ~ 12957833 (-)
G77287 NA other upstream 3676882 13619276 ~ 13633819 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location