G159014


Basic Information

Item Value
gene id G159014
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 17448832 ~ 17451332 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU215548
TAAAAAACTAGTACTAATAGAATTGAGAGAACCACTGGAAATATTTTctcagtgtgtttctgtgcttACTCATTCAGGTGAATGGTGTGACCGTGCTGCATGCAGAGATTCTTTAGGCTGTAGGGAGGGACAGGATGCTCACCTATTTTTGAACCTTTCAGGGTTTAGAATGTGAATATCCAGCCTGCCTGTGGGTGACTGGACCAGGGTTCATATTCCTCACGTTTGAGGGATTGTTGATCCACATTTACTCCCTGTGCACCCTCTGTCTTTATATGGCTATAAGAGGAAACATGCTTTTTCATTTGCCTCACCCAATGTTGTTATTTTCTATCTAAACTGCACATTTTAAAGAAAGGGATATTTGAAACTCAGGACCACAAGCCCATTTGAAAACAACACTGAGCTTCATGCAGGATGACCTATGCATTTCGTACATCTATCAAGTCAATTCTATTTTACTACCAACTATTTTTGTGTAGAGAGAAAATGGATCTAGATATAAAGAGCAAGAGATTTATAATTCAACAAAAGTAGGTGTGAGTACTGCTGGCAGCTCTTGAGGTATGCTCATATTTTTCTATAGAAGTTGATCTCTCAAGAGGGTGTTCTTGTGTTCATAGCTGGAAGTGTTTTTTGAGCCAGGCCCCATCAGTAAAGAGGGGCTTTTTATCTTATACTTAAATAGTGTAAAGATTGACTTCCTCGACTGgagaatttaattttatttttagtatgaAACAGCTGATTAAGTGCATGGTCTTGCAATTCCTGGATTTGTAATAGATCAGCAGttcattgtattgtgttgtacgTGTTGCTTTTAGTTTGAATTGACACACTGTATATCACGGCTGCCTCTTTTTAATAGCTTAGGCAAATACATGTTGAAACATTGCACACTCGGATGTTCTCACAGCTCTTGTAGCTTGCTTGTGAAAATAAGCTTGTCATGCAGTGAACTGATTCAAGTTGTTTAAGGAACTGTTAATCCTTGTGGTTAATGTTTGATCCCCACCTGCAAGAGGAATTCCACTGATTTTTACCGCCCagagtagcacataattgtgaattggaacaaaaatgatgcatggTTACTTGGGaaaaatttaatcaaataaaaatatgtaaagtgtgacatgcaaaagccCCCAGTGTATTCAGTGTTGGTAAGTCAAATAAAATTCAAATTACGGTACTCAGAAATTCTGactaaacaatatttaaaggagttaagagagtgcacagtttagcattttaacagtgcaaagaaaacatcttAATCCCAGTACAAAAATTTAATGTTAGTCTGTTTTGCAGATCACCTACCCAATTAACGAATATCCAAATACCCTGGTCTAGCCCTGTCTCTTACATGCGTCTTAAGATAAGGATTATTTGAATTGCCTCATATATAAACTCTCTTTTTTGACTACAATTATGTTCCACATTGTTTTAATTAAGATAAAAGAAACATAATGTGAATTATAATGTGAATTAACAAAAGATGCTGACTAAGGgcaagggtttttttttataattatgaaccatgcatggttaatattttggaatgctgattcagaaatgctttttttttctgtcatacTTCATTTTGTTGATGGCTATGGTCTCATGTTCAGGCTTTAAGGACAAGCCTTGTGTTTGTCATAAGGCAGGGCCTCAGGAAATATTGCATGAAACATaagtcacatttttttcatgctatattttaaaacacaggACACTACACGAGTCCTAATTCCTCCTAGTCCATTTAAAGCACACAGAGCCATTGTAGtgtgttttaatacatatatttagttCGCTCTGGTCTGAGTTAGATAAATGGTTCTAACCTTGGAGCATTTTCCTTTTCTATAATTACTATAGCTTCATGTAATAACGTTGATGTAGCTTTATAAGTCATTAAACTATTTGCATGTCTGCTTCCTGTCATCACCACTGAGATTGAACTAGTAAGATGATCTAGAATGGTCCATTTCACATCAAACTGCTCTGAATGACTTTGATTCCATTTTATCAATTTAATTAtgcagaaaaatgaaagaaaaaaatcaatcagtGGAATTCCTCTTTAATAATTGTCTCTGCACTGTGTGTCCAATGTTGTGTATCCTGCTCGCTGCCCCCCAGTAGCTCATCAGCGTCTGAGCACGTTCTGAACTCTGCTGTGGAGTGTGTTTTAGATGttgaaattttgtttaaatccaAATACAGATCAGTAGTATCATGTCCTTTTCTGAATTCCAATCTAGTGAGGCAGAAATTAAAGGTTTTGTCTTATGGCTTCAGTACTTATTTTGTGCGCTTTTTCCATTTGttgcttagttttttttttttttttttgggcctaAGAAGTGCTTTCTCTCTGCAGCTTTACCTACATAGGACTTTCCTTGTATTAACTGTTAAGCTATTTTCTTGTATTGCCTCGTTTTGTAATTCAAgaataataatttgtaataaaatgtgtatctAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215548 True 2501 lncRNA 0.36 1 17448832 17451332

Neighbor

gene id symbol gene type direction distance location
LOC103027004 smad3,LOC108424035,LOC105892538,LOC103353199,LOC107740443 coding upstream 1039 17425218 ~ 17447793 (+)
LOC107197433 NA coding upstream 147150 17295207 ~ 17301682 (+)
rab11a rab11a,LOC105007892,LOC106591986,LOC100698633,LOC106588008,LOC103378951,LOC106562755 coding upstream 517470 16921369 ~ 16931362 (+)
slc24a1 slc24a1,LOC107738725,LOC107596980,LOC107742879,LOC107686291 coding upstream 564677 16859892 ~ 16884155 (+)
hacd3 hacd3,LOC107738726,LOC107686290,LOC107672296,LOC107596982,LOC107583769,LOC107742880 coding upstream 596373 16842661 ~ 16852459 (+)
iqch NA coding downstream 6683 17458015 ~ 17492931 (+)
c18h15orf61 cunh15orf61,c4h15orf61,LOC103025902,LOC107738714,LOC107583911,LOC107718314,LOC107686305,LOC107596966 coding downstream 42461 17493793 ~ 17498771 (+)
LOC103029280 skor1 coding downstream 112543 17563875 ~ 17571917 (+)
LOC103025173 pias1b,LOC108424062,LOC108264782,LOC107596961,LOC107738708 coding downstream 126060 17577392 ~ 17604549 (+)
morf4l1 morf4l1,LOC107596963,LOC107686360,LOC107738770,LOC107708218,LOC107672187 coding downstream 159545 17610877 ~ 17622128 (+)
G158991 NA non-coding upstream 164950 17283467 ~ 17283882 (+)
G158882 rpl4 non-coding upstream 271640 17173067 ~ 17177192 (+)
G158891 NA non-coding upstream 290381 17157142 ~ 17158451 (+)
G158881 NA non-coding upstream 364571 17083953 ~ 17084261 (+)
G158878 NA non-coding upstream 365094 17079112 ~ 17083738 (+)
G159017 aagab non-coding downstream 3983 17455315 ~ 17456977 (+)
G159028 NA non-coding downstream 144727 17596059 ~ 17599354 (+)
G159115 NA non-coding downstream 418675 17870007 ~ 17870468 (+)
G159120 kif23,LOC107686310 non-coding downstream 475656 17926988 ~ 17938088 (+)
G159122 NA non-coding downstream 490984 17942316 ~ 17946683 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 76626 17327100 ~ 17372206 (+)
zwilch zwilch other upstream 259581 17177675 ~ 17189251 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other upstream 276604 17101612 ~ 17172228 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other upstream 650432 16779506 ~ 16798400 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other upstream 723623 16654136 ~ 16725209 (+)
rapsn rapsn other downstream 519764 17971096 ~ 17985904 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other downstream 1074196 18525528 ~ 18576437 (+)
G159666 NA other downstream 2734184 20185516 ~ 20186919 (+)
G159728 NA other downstream 3285266 20736598 ~ 20737049 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 3557970 21009302 ~ 21011794 (+)

Expression


Co-expression Network